Package: DiffLogo 2.29.0
Hendrik Treutler
DiffLogo: DiffLogo: A comparative visualisation of biooligomer motifs
DiffLogo is an easy-to-use tool to visualize motif differences.
Authors:
DiffLogo_2.29.0.tar.gz
DiffLogo_2.29.0.zip(r-4.5)DiffLogo_2.29.0.zip(r-4.4)DiffLogo_2.29.0.zip(r-4.3)
DiffLogo_2.29.0.tgz(r-4.4-any)DiffLogo_2.29.0.tgz(r-4.3-any)
DiffLogo_2.29.0.tar.gz(r-4.5-noble)DiffLogo_2.29.0.tar.gz(r-4.4-noble)
DiffLogo_2.29.0.tgz(r-4.4-emscripten)DiffLogo_2.29.0.tgz(r-4.3-emscripten)
DiffLogo.pdf |DiffLogo.html✨
DiffLogo/json (API)
| # Install 'DiffLogo' in R: |
| install.packages('DiffLogo', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/mgledi/difflogo/issues
On BioConductor:DiffLogo-2.29.0(bioc 3.20)DiffLogo-2.28.0(bioc 3.19)
softwaresequencematchingmultiplecomparisonmotifannotationvisualizationalignment
Last updated 5 months agofrom:bff5c6a17f. Checks:OK: 1 WARNING: 6. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Sep 28 2024 |
| R-4.5-win | WARNING | Sep 28 2024 |
| R-4.5-linux | WARNING | Sep 28 2024 |
| R-4.4-win | WARNING | Sep 28 2024 |
| R-4.4-mac | WARNING | Sep 28 2024 |
| R-4.3-win | WARNING | Sep 28 2024 |
| R-4.3-mac | WARNING | Sep 28 2024 |
Exports:AlphabetASNcalculatePvaluecreateDiffLogoObjectdifferenceOfICsdiffLogodiffLogoFromPwmdiffLogoTablediffLogoTableConfigurationDNAdrawDiffLogoTableenrichDiffLogoObjectWithPvaluesenrichDiffLogoTableWithPvaluesextendPwmsFromAlignmentVectorFULL_ALPHABETgetAlphabetFromCharactersgetAlphabetFromSequencesgetPwmFromAlignmentgetPwmFromAlignmentFilegetPwmFromFastaFilegetPwmFromFilegetPwmFromHomerFilegetPwmFromPfmOrJasparFilegetPwmFromPwmFilegetSequencesFromAlignmentFilegetSequencesFromFastaFileinformationContentlossOfAbsICDifferencesmultipleLocalPwmsAlignmentnormalizedDifferenceOfProbabilitiesnormalizePWMprepareDiffLogoTableprobabilitiespwmDivergenceRNAseqLogoshannonDivergencesumOfAbsICDifferencessumOfAbsProbabilityDifferencessumProbabilities
