Package: DeMixT 2.1.0
Ruonan Li
DeMixT: Cell type-specific deconvolution of heterogeneous tumor samples with two or three components using expression data from RNAseq or microarray platforms
DeMixT is a software package that performs deconvolution on transcriptome data from a mixture of two or three components.
Authors:
DeMixT_2.1.0.tar.gz
DeMixT_2.1.0.zip(r-4.7)DeMixT_2.1.0.zip(r-4.6)DeMixT_2.1.0.zip(r-4.5)
DeMixT_2.1.0.tgz(r-4.6-x86_64)DeMixT_2.1.0.tgz(r-4.6-arm64)DeMixT_2.1.0.tgz(r-4.5-x86_64)DeMixT_2.1.0.tgz(r-4.5-arm64)
DeMixT_2.1.0.tar.gz(r-4.7-arm64)DeMixT_2.1.0.tar.gz(r-4.7-x86_64)DeMixT_2.1.0.tar.gz(r-4.6-arm64)DeMixT_2.1.0.tar.gz(r-4.6-x86_64)
DeMixT_2.1.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
DeMixT/json (API)
NEWS
| # Install 'DeMixT' in R: |
| install.packages('DeMixT', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
- test.data.2comp - Simulated two-component test data
- test.data.3comp - Simulated three-component mixed cell line test data
On BioConductor:DeMixT-2.1.0(bioc 3.24)DeMixT-2.0.0(bioc 3.23)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
softwarestatisticalmethodclassificationgeneexpressionsequencingmicroarraytissuemicroarraycoveragecppopenmp
Last updated from:7874c43e7a. Checks:1 WARNING, 11 NOTE, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | WARNING | 202 | ||
| linux-devel-arm64 | NOTE | 319 | ||
| linux-devel-x86_64 | NOTE | 415 | ||
| source / vignettes | OK | 302 | ||
| linux-release-arm64 | NOTE | 313 | ||
| linux-release-x86_64 | NOTE | 381 | ||
| macos-release-arm64 | NOTE | 221 | ||
| macos-release-x86_64 | NOTE | 466 | ||
| macos-oldrel-arm64 | NOTE | 198 | ||
| macos-oldrel-x86_64 | NOTE | 445 | ||
| windows-devel | NOTE | 418 | ||
| windows-release | NOTE | 439 | ||
| windows-oldrel | NOTE | 449 | ||
| wasm-release | OK | 180 |
Exports:batch_correctionDeMixNBDeMixNB_preprocessingDeMixTDeMixT_DEDeMixT_GSDeMixT_preprocessingDeMixT_S2detect_suspicious_sample_by_hierarchical_clustering_2compgene_selection_DEOptimum_KernelCplot_dimplot_sdscale_normalization_75th_percentilesimulate_2compsimulate_3compsubset_sdsubset_sd_gene_remaining
Dependencies:abindannotateAnnotationDbiaskpassbase64encBHBiobaseBiocGenericsBiocParallelBiostringsbitbit64blobcachemclicodetoolscpp11crayoncurlDBIDelayedArraydendextendedgeRevdfarverfastmapfitdistrplusformatRfutile.loggerfutile.optionsgenefiltergenericsGenomicRangesggplot2glueGPArotationgridExtragtablehttrIRangesisobandjsonliteKEGGRESTKernSmoothlabelinglambda.rlatticelifecyclelimmalocfitmagrittrMASSMatrixmatrixcalcMatrixGenericsmatrixStatsmemoisemgcvmimemnormtnlmeopensslpbapplypkgconfigpngpsychR6RColorBrewerRcpprlangRSQLiteS4ArraysS4VectorsS7scalesSeqinfosnowSparseArraystatmodSummarizedExperimentsurvivalsvasystruncdistvctrsviridisviridisLitewithrXMLxtableXVector
