Package: DeMAND 1.37.0
Jung Hoon Woo
DeMAND: DeMAND
DEMAND predicts Drug MoA by interrogating a cell context specific regulatory network with a small number (N >= 6) of compound-induced gene expression signatures, to elucidate specific proteins whose interactions in the network is dysregulated by the compound.
Authors:
DeMAND_1.37.0.tar.gz
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DeMAND.pdf |DeMAND.html✨
DeMAND/json (API)
# Install 'DeMAND' in R: |
install.packages('DeMAND', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
- bcellAnno - Annotation for the expression data
- bcellExp - B cell expression data
- bcellNetwork - B cell network
- caseIndex - Case sample index
- controlIndex - Control sample index
On BioConductor:DeMAND-1.37.0(bioc 3.21)DeMAND-1.36.0(bioc 3.20)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
systemsbiologynetworkenrichmentgeneexpressionstatisticalmethodnetwork
Last updated 2 months agofrom:4822c1cb49. Checks:OK: 1 NOTE: 6. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Dec 19 2024 |
R-4.5-win | NOTE | Dec 19 2024 |
R-4.5-linux | NOTE | Dec 19 2024 |
R-4.4-win | NOTE | Dec 19 2024 |
R-4.4-mac | NOTE | Dec 19 2024 |
R-4.3-win | NOTE | Dec 19 2024 |
R-4.3-mac | NOTE | Dec 19 2024 |
Exports:demandClassprintDeMANDrunDeMAND
Dependencies:KernSmooth
Readme and manuals
Help Manual
Help page | Topics |
---|---|
Annotation for the expression data | bcellAnno |
B cell expression data | bcellExp |
B cell network | bcellNetwork |
Case sample index | caseIndex |
Control sample index | controlIndex |
The DeMAND instance | demand-instance |
The demand class constructor | demandClass |
Basic methods for class demand | printDeMAND |
Run DeMAND algorithm | runDeMAND |