Package: DeMAND 1.35.0
Jung Hoon Woo
DeMAND: DeMAND
DEMAND predicts Drug MoA by interrogating a cell context specific regulatory network with a small number (N >= 6) of compound-induced gene expression signatures, to elucidate specific proteins whose interactions in the network is dysregulated by the compound.
Authors:
DeMAND_1.35.0.tar.gz
DeMAND_1.35.0.zip(r-4.5)DeMAND_1.35.0.zip(r-4.4)DeMAND_1.35.0.zip(r-4.3)
DeMAND_1.35.0.tgz(r-4.4-any)DeMAND_1.35.0.tgz(r-4.3-any)
DeMAND_1.35.0.tar.gz(r-4.5-noble)DeMAND_1.35.0.tar.gz(r-4.4-noble)
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DeMAND.pdf |DeMAND.html✨
DeMAND/json (API)
| # Install 'DeMAND' in R: |
| install.packages('DeMAND', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
- bcellAnno - Annotation for the expression data
- bcellExp - B cell expression data
- bcellNetwork - B cell network
- caseIndex - Case sample index
- controlIndex - Control sample index
On BioConductor:DeMAND-1.35.0(bioc 3.20)DeMAND-1.34.0(bioc 3.19)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 2 months agofrom:d3391b4f3a
Exports:demandClassprintDeMANDrunDeMAND
Dependencies:KernSmooth
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Annotation for the expression data | bcellAnno |
| B cell expression data | bcellExp |
| B cell network | bcellNetwork |
| Case sample index | caseIndex |
| Control sample index | controlIndex |
| The DeMAND instance | demand-instance |
| The demand class constructor | demandClass |
| Basic methods for class demand | printDeMAND |
| Run DeMAND algorithm | runDeMAND |