Package: DOSE 3.31.2
Guangchuang Yu
DOSE: Disease Ontology Semantic and Enrichment analysis
This package implements five methods proposed by Resnik, Schlicker, Jiang, Lin and Wang respectively for measuring semantic similarities among DO terms and gene products. Enrichment analyses including hypergeometric model and gene set enrichment analysis are also implemented for discovering disease associations of high-throughput biological data.
Authors:
DOSE_3.31.2.tar.gz
DOSE_3.31.2.zip(r-4.5)DOSE_3.31.2.zip(r-4.4)DOSE_3.31.2.zip(r-4.3)
DOSE_3.31.2.tgz(r-4.4-any)DOSE_3.31.2.tgz(r-4.3-any)
DOSE_3.31.2.tar.gz(r-4.5-noble)DOSE_3.31.2.tar.gz(r-4.4-noble)
DOSE_3.31.2.tgz(r-4.4-emscripten)DOSE_3.31.2.tgz(r-4.3-emscripten)
DOSE.pdf |DOSE.html✨
DOSE/json (API)
NEWS
| # Install 'DOSE' in R: |
| install.packages('DOSE', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/guangchuangyu/dose/issues
- DGN_EXTID2PATHID - Datasets
- DGN_PATHID2EXTID - Datasets
- DGN_PATHID2NAME - Datasets
- DO2ALLEG - Datasets
- DO2EG - Datasets
- DOIC - Datasets
- DOLite2EG - Datasets
- DOLiteTerm - Datasets
- EG2ALLDO - Datasets
- EG2DO - Datasets
- EG2DOLite - Datasets
- NCG_EXTID2PATHID - Datasets
- NCG_PATHID2EXTID - Datasets
- NCG_PATHID2NAME - Datasets
- VDGN_EXTID2PATHID - Datasets
- VDGN_PATHID2EXTID - Datasets
- VDGN_PATHID2NAME - Datasets
- dotbl - Datasets
- geneList - Datasets
- hpotbl - Datasets
- mpotbl - Datasets
On BioConductor:DOSE-3.31.1(bioc 3.20)DOSE-3.30.1(bioc 3.19)
Last updated 27 days agofrom:98301d9860
Exports:clusterSimdoseSimdoSimenrichDGNenrichDGNvenrichDOenrichHPOenrichMPOenrichNCGEXTID2NAMEfacet_gridgene2DOgeneIDgeneInCategorygeneSimgseDGNgseDOgseHPOgseMPOgseNCGgsfilterhpoSimmclusterSimmpoSimparse_ratiosetReadableshowsimplotsummarytheme_dose
Dependencies:AnnotationDbiaskpassBHBiobaseBiocGenericsBiocParallelBiostringsbitbit64blobcachemclicodetoolscolorspacecowplotcpp11crayoncurldata.tableDBIdigestfansifarverfastmapfastmatchfgseaformatRfsfutile.loggerfutile.optionsGenomeInfoDbGenomeInfoDbDataggplot2glueGO.dbGOSemSimgtableHDO.dbhttrIRangesisobandjsonliteKEGGRESTlabelinglambda.rlatticelifecyclemagrittrMASSMatrixmemoisemgcvmimemunsellnlmeopensslpillarpkgconfigplogrplyrpngqvalueR6RColorBrewerRcppreshape2rlangRSQLiteS4VectorsscalessnowstringistringrsystibbleUCSC.utilsutf8vctrsviridisLitewithrXVectoryulab.utilszlibbioc
