Package: DEScan2 1.33.0

Dario Righelli

DEScan2: Differential Enrichment Scan 2

Integrated peak and differential caller, specifically designed for broad epigenomic signals.

Authors:Dario Righelli [aut, cre], John Koberstein [aut], Bruce Gomes [aut], Nancy Zhang [aut], Claudia Angelini [aut], Lucia Peixoto [aut], Davide Risso [aut]

DEScan2_1.33.0.tar.gz
DEScan2_1.33.0.zip(r-4.7)DEScan2_1.33.0.zip(r-4.6)DEScan2_1.31.0.zip(r-4.5)
DEScan2_1.33.0.tgz(r-4.6-x86_64)DEScan2_1.33.0.tgz(r-4.6-arm64)DEScan2_1.31.0.tgz(r-4.5-x86_64)DEScan2_1.31.0.tgz(r-4.5-arm64)
DEScan2_1.33.0.tar.gz(r-4.7-arm64)DEScan2_1.33.0.tar.gz(r-4.7-x86_64)DEScan2_1.33.0.tar.gz(r-4.6-arm64)DEScan2_1.33.0.tar.gz(r-4.6-x86_64)
DEScan2_1.33.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
DEScan2/json (API)
NEWS

# Install 'DEScan2' in R:
install.packages('DEScan2', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))
Uses libs:
  • c++– GNU Standard C++ Library v3

On BioConductor:DEScan2-1.33.0(bioc 3.24)DEScan2-1.32.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

immunooncologypeakdetectionepigeneticssoftwaresequencingcoveragecpp

3.60 score 4 scripts 401 downloads 1 mentions 18 exports 120 dependencies

Last updated from:47c99148d9. Checks:1 ERROR, 5 NOTE, 2 OK, 3 WARNING, 3 FAIL. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksERROR287
linux-devel-arm64NOTE499
linux-devel-x86_64NOTE618
source / vignettesOK377
linux-release-arm64WARNING458
linux-release-x86_64NOTE603
macos-release-arm64NOTE312
macos-release-x86_64NOTE515
macos-oldrel-arm64FAIL70
macos-oldrel-x86_64FAIL177
windows-develWARNING584
windows-releaseWARNING611
windows-oldrelFAIL101
wasm-releaseOK222

Exports:binnedCoverageconstructBedRangescountFinalRegionscreateGrangescutGRangesPerChromosomedivideEachSampleByChromosomesfinalRegionsfindOverlapsOverSamplesfindPeaksfromSamplesToChrsGRangesListkeepRelevantChrsreadBamAsBedreadBedFilereadFilesAsGRangesListRleListToRleMatrixsaveGRangesAsBedsaveGRangesAsTsvsetGRGenomeInfo

Dependencies:abindAnnotationDbiAnnotationFilteraskpassBHBiobaseBiocBaseUtilsBiocFileCacheBiocGenericsBiocIOBiocParallelbiomaRtBiostringsbitbit64bitopsblobBSgenomecachemChIPpeakAnnocigarilloclicodetoolscpp11crayoncurldata.tableDBIdbplyrDelayedArraydplyrensembldbfarverfastmapfilelockformatRfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomicAlignmentsGenomicFeaturesGenomicRangesggplot2gluegraphgtablehmshttrhttr2InteractionSetIRangesisobandjsonliteKEGGRESTlabelinglambda.rlatticelazyevallifecyclemagrittrMASSMatrixMatrixGenericsmatrixStatsmemoisemimemulttestopensslpillarpkgconfigplyrpngprettyunitsprogressProtGenericspurrrpwalignR6rappdirsRBGLRColorBrewerRcppRcppArmadilloRcppThreadRCurlregioneRrestfulrRhtslibrjsonrlangRsamtoolsRSQLitertracklayerS4ArraysS4VectorsS7scalesSeqinfosnowSparseArraystringistringrSummarizedExperimentsurvivalsystibbletidyrtidyselectUCSC.utilsuniversalmotifutf8vctrsVennDiagramviridisLitewithrXMLxml2XVectoryaml

DEScan2

Dario Righelli - John Koberstein - Bruce Gomes

Rendered fromDEScan2.Rmdusingknitr::rmarkdownon May 28 2026.

Last update: 2019-02-26
Started: 2017-12-19