Package: CytoPipelineGUI 1.5.0
Philippe Hauchamps
CytoPipelineGUI: GUI's for visualization of flow cytometry data analysis pipelines
This package is the companion of the `CytoPipeline` package. It provides GUI's (shiny apps) for the visualization of flow cytometry data analysis pipelines that are run with `CytoPipeline`. Two shiny applications are provided, i.e. an interactive flow frame assessment and comparison tool and an interactive scale transformations visualization and adjustment tool.
Authors:
CytoPipelineGUI_1.5.0.tar.gz
CytoPipelineGUI_1.5.0.zip(r-4.5)CytoPipelineGUI_1.5.0.zip(r-4.4)CytoPipelineGUI_1.3.0.zip(r-4.3)
CytoPipelineGUI_1.5.0.tgz(r-4.4-any)CytoPipelineGUI_1.3.0.tgz(r-4.3-any)
CytoPipelineGUI_1.5.0.tar.gz(r-4.5-noble)CytoPipelineGUI_1.5.0.tar.gz(r-4.4-noble)
CytoPipelineGUI_1.5.0.tgz(r-4.4-emscripten)CytoPipelineGUI_1.3.0.tgz(r-4.3-emscripten)
CytoPipelineGUI.pdf |CytoPipelineGUI.html✨
CytoPipelineGUI/json (API)
NEWS
| # Install 'CytoPipelineGUI' in R: |
| install.packages('CytoPipelineGUI', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/uclouvain-cbio/cytopipelinegui/issues
Pkgdown:https://uclouvain-cbio.github.io
On BioConductor:CytoPipelineGUI-1.5.0(bioc 3.21)CytoPipelineGUI-1.4.0(bioc 3.20)
flowcytometrypreprocessingqualitycontrolworkflowstepimmunooncologysoftwarevisualizationguishinyapps
Last updated 2 months agofrom:d7627a815c. Checks:OK: 1 NOTE: 6. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Dec 18 2024 |
| R-4.5-win | NOTE | Dec 18 2024 |
| R-4.5-linux | NOTE | Dec 18 2024 |
| R-4.4-win | NOTE | Dec 18 2024 |
| R-4.4-mac | NOTE | Dec 18 2024 |
| R-4.3-win | NOTE | Sep 28 2024 |
| R-4.3-mac | NOTE | Sep 28 2024 |
Exports:CytoPipelineCheckAppplotDiffFlowFrameplotScaleTransformedChannelplotSelectedFlowFrameplotSelectedWorkflowScaleTransformApp
Dependencies:abindaskpassbase64encBHBiobaseBiocFileCacheBiocGenericsBiocParallelbitbit64blobbslibcachemchangepointcirclizecliclueclustercodetoolscolorspacecommonmarkComplexHeatmapcpp11crayoncrosstalkcurlcytolibCytoPipelinedata.tableDBIdbplyrDelayedArraydiagramdigestdoParalleldplyrevaluatefansifarverfastmapfilelockflowAIflowCoreflowWorkspacefontawesomeforeachformatRfsfutile.loggerfutile.optionsgenericsGetoptLongggcytoggplot2GlobalOptionsgluegraphgridExtragtablehexbinhighrhtmltoolshtmlwidgetshttpuvhttrIRangesisobanditeratorsjquerylibjsonliteknitrlabelinglambda.rlaterlatticelazyevallifecyclemagrittrMASSMatrixMatrixGenericsmatrixStatsmemoisemgcvmimemunsellncdfFlownlmeopensslPeacoQCpillarpkgconfigplogrplotlyplyrpngpromisespurrrR6rappdirsRBGLRColorBrewerRcppreshape2RgraphvizRhdf5librjsonrlangrmarkdownRProtoBufLibRSQLiteS4ArraysS4VectorssassscalesshapeshinysnowsourcetoolsSparseArraystringistringrsystibbletidyrtidyselecttinytexutf8vctrsviridisLitewithrxfunXMLxtableXVectoryamlzlibbioczoo
CytoPipelineGUI : visualization of Flow Cytometry Data Analysis Pipelines run with CytoPipeline
Rendered fromCytoPipelineGUI.Rmdusingknitr::rmarkdownon Dec 18 2024.Last update: 2023-09-05
Started: 2023-07-04
Demonstration of the CytoPipeline R package suite functionalities
Rendered fromDemo.Rmdusingknitr::rmarkdownon Dec 18 2024.Last update: 2023-09-04
Started: 2023-09-04
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| interactive visualization of flow cytometry data analysis pipeline objects stored in cache | CytoPipelineCheckApp |
| Plot the difference plot between two flow frames from a CytoPipeline run | plotDiffFlowFrame |
| Plot a flow frame in 1D with explicit user given scale transform | plotScaleTransformedChannel |
| Plot a flow frame from a CytoPipeline run | plotSelectedFlowFrame |
| Plot a pipeline workflow from a CytoPipeline run | plotSelectedWorkflow |
| interactive display and modification of scale transform list | ScaleTransformApp |