Package: CytoPipelineGUI 1.3.0
![](https://r-universe.dev/static/nobody.jpg)
Philippe Hauchamps
CytoPipelineGUI: GUI's for visualization of flow cytometry data analysis pipelines
This package is the companion of the `CytoPipeline` package. It provides GUI's (shiny apps) for the visualization of flow cytometry data analysis pipelines that are run with `CytoPipeline`. Two shiny applications are provided, i.e. an interactive flow frame assessment and comparison tool and an interactive scale transformations visualization and adjustment tool.
Authors:
CytoPipelineGUI_1.3.0.tar.gz
CytoPipelineGUI_1.3.0.zip(r-4.5)CytoPipelineGUI_1.3.0.zip(r-4.4)CytoPipelineGUI_1.3.0.zip(r-4.3)
CytoPipelineGUI_1.3.0.tgz(r-4.4-any)CytoPipelineGUI_1.3.0.tgz(r-4.3-any)
CytoPipelineGUI_1.3.0.tar.gz(r-4.5-noble)CytoPipelineGUI_1.3.0.tar.gz(r-4.4-noble)
CytoPipelineGUI_1.3.0.tgz(r-4.4-emscripten)CytoPipelineGUI_1.3.0.tgz(r-4.3-emscripten)
CytoPipelineGUI.pdf |CytoPipelineGUI.html✨
CytoPipelineGUI/json (API)
NEWS
# Install 'CytoPipelineGUI' in R: |
install.packages('CytoPipelineGUI', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/uclouvain-cbio/cytopipelinegui/issues
On BioConductor:CytoPipelineGUI-1.3.0(bioc 3.20)CytoPipelineGUI-1.2.0(bioc 3.19)
Last updated 2 months agofrom:8e614da45c
Exports:CytoPipelineCheckAppplotDiffFlowFrameplotScaleTransformedChannelplotSelectedFlowFrameplotSelectedWorkflowScaleTransformApp
Dependencies:abindaskpassbase64encBHBiobaseBiocFileCacheBiocGenericsBiocParallelbitbit64blobbslibcachemchangepointcirclizecliclueclustercodetoolscolorspacecommonmarkComplexHeatmapcpp11crayoncrosstalkcurlcytolibCytoPipelinedata.tableDBIdbplyrDelayedArraydiagramdigestdoParalleldplyrevaluatefansifarverfastmapfilelockflowAIflowCoreflowWorkspacefontawesomeforeachformatRfsfutile.loggerfutile.optionsgenericsGetoptLongggcytoggplot2GlobalOptionsgluegraphgridExtragtablehexbinhighrhtmltoolshtmlwidgetshttpuvhttrIRangesisobanditeratorsjquerylibjsonliteknitrlabelinglambda.rlaterlatticelazyevallifecyclemagrittrMASSMatrixMatrixGenericsmatrixStatsmemoisemgcvmimemunsellncdfFlownlmeopensslPeacoQCpillarpkgconfigplogrplotlyplyrpngpromisespurrrR6rappdirsRBGLRColorBrewerRcppreshape2RgraphvizRhdf5librjsonrlangrmarkdownRProtoBufLibRSQLiteS4ArraysS4VectorssassscalesshapeshinysnowsourcetoolsSparseArraystringistringrsystibbletidyrtidyselecttinytexutf8vctrsviridisLitewithrxfunXMLxtableXVectoryamlzlibbioczoo
CytoPipelineGUI : visualization of Flow Cytometry Data Analysis Pipelines run with CytoPipeline
Rendered fromCytoPipelineGUI.Rmd
usingknitr::rmarkdown
on Jun 30 2024.Last update: 2023-09-05
Started: 2023-07-04
Demonstration of the CytoPipeline R package suite functionalities
Rendered fromDemo.Rmd
usingknitr::rmarkdown
on Jun 30 2024.Last update: 2023-09-04
Started: 2023-09-04
Readme and manuals
Help Manual
Help page | Topics |
---|---|
interactive visualization of flow cytometry data analysis pipeline objects stored in cache | CytoPipelineCheckApp |
Plot the difference plot between two flow frames from a CytoPipeline run | plotDiffFlowFrame |
Plot a flow frame in 1D with explicit user given scale transform | plotScaleTransformedChannel |
Plot a flow frame from a CytoPipeline run | plotSelectedFlowFrame |
Plot a pipeline workflow from a CytoPipeline run | plotSelectedWorkflow |
interactive display and modification of scale transform list | ScaleTransformApp |