Package: CopyNumberPlots 1.21.0

Bernat Gel

CopyNumberPlots: Create Copy-Number Plots using karyoploteR functionality

CopyNumberPlots have a set of functions extending karyoploteRs functionality to create beautiful, customizable and flexible plots of copy-number related data.

Authors:Bernat Gel <[email protected]> and Miriam Magallon <[email protected]>

CopyNumberPlots_1.21.0.tar.gz
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CopyNumberPlots.pdf |CopyNumberPlots.html✨
CopyNumberPlots/json (API)
NEWS

Peer review:

Bug tracker:https://github.com/bernatgel/copynumberplots/issues

On BioConductor:CopyNumberPlots-1.21.0(bioc 3.20)CopyNumberPlots-1.20.0(bioc 3.19)

bioconductor-package

39 exports 1.31 score 135 dependencies 2 dependents

Last updated 2 months agofrom:f3b8d6f463

Exports:colByCopyNumbercomputeHclustPlotOrderEnsemblStylegetBAFColumngetChrColumngetColumngetCopyNumberColorsgetCopyNumberColumngetEndColumngetIDColumngetLOHColumngetLRRColumngetPosColumngetSegmentValueColumngetStartColumnloadCopyNumberCallsloadCopyNumberCallsCnmopsloadCopyNumberCallsCNVkitloadCopyNumberCallsDECoNloadCopyNumberCallsDNAcopyloadCopyNumberCallsPanelcnmopsloadCopyNumberCallspennCNVloadCopyNumberCallsSegloadSNPDataloadSNPDataDNAcopyloadSNPDataFromVCFplotBAFplotCopyNumberCallsplotCopyNumberCallsAsLinesplotCopyNumberSummaryplotLRRplotSingleCellCopyNumberCallsplotSingleCellCopyNumberSummaryprepareLabelsreadHDF5ZtreeremoveNAstransformChrUCSCStyleZtree2Hclust

Dependencies:abindAnnotationDbiAnnotationFilteraskpassbackportsbamsignalsbase64encbezierBHBiobaseBiocGenericsBiocIOBiocParallelBiostringsbiovizBasebitbit64bitopsblobBSgenomebslibcachemcheckmatecliclustercn.mopscodetoolscolorspacecpp11crayoncurldata.tableDBIDelayedArraydichromatdigestensembldbevaluatefansifarverfastmapfontawesomeforeignformatRFormulafsfutile.loggerfutile.optionsGenomeInfoDbGenomeInfoDbDataGenomicAlignmentsGenomicFeaturesGenomicRangesggplot2gluegridExtragtablehighrHmischtmlTablehtmltoolshtmlwidgetshttrIRangesisobandjquerylibjsonlitekaryoploteRKEGGRESTknitrlabelinglambda.rlatticelazyevallifecyclemagrittrMASSMatrixMatrixGenericsmatrixStatsmemoisemgcvmimemunsellnlmennetopensslpillarpkgconfigplogrpngProtGenericsR6rappdirsRColorBrewerRcppRCurlregioneRrestfulrrhdf5rhdf5filtersRhdf5libRhtslibrjsonrlangrmarkdownrpartRsamtoolsRSQLiterstudioapirtracklayerS4ArraysS4VectorssassscalessnowSparseArraystringistringrSummarizedExperimentsystibbletinytexUCSC.utilsutf8VariantAnnotationvctrsviridisviridisLitewithrxfunXMLXVectoryamlzlibbioc