Package: ClusterFoldSimilarity 1.9.0

Oscar Gonzalez-Velasco

ClusterFoldSimilarity: Calculate similarity of clusters from different single cell samples using foldchanges

This package calculates a similarity coefficient using the fold changes of shared features (e.g. genes) among clusters of different samples/batches/datasets. The similarity coefficient is calculated using the dot-product (Hadamard product) of every pairwise combination of Fold Changes between a source cluster i of sample/dataset n and all the target clusters j in sample/dataset m

Authors:Oscar Gonzalez-Velasco [cre, aut]

ClusterFoldSimilarity_1.9.0.tar.gz
ClusterFoldSimilarity_1.9.0.zip(r-4.7)ClusterFoldSimilarity_1.9.0.zip(r-4.6)ClusterFoldSimilarity_1.9.0.zip(r-4.5)
ClusterFoldSimilarity_1.9.0.tgz(r-4.6-any)ClusterFoldSimilarity_1.9.0.tgz(r-4.5-any)
ClusterFoldSimilarity_1.9.0.tar.gz(r-4.7-any)ClusterFoldSimilarity_1.9.0.tar.gz(r-4.6-any)
ClusterFoldSimilarity_1.9.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
ClusterFoldSimilarity/json (API)

# Install 'ClusterFoldSimilarity' in R:
install.packages('ClusterFoldSimilarity', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

On BioConductor:ClusterFoldSimilarity-1.9.0(bioc 3.24)ClusterFoldSimilarity-1.8.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

singlecellclusteringfeatureextractiongraphandnetworkgenetargetrnaseq

4.43 score 18 scripts 266 downloads 4 exports 162 dependencies

Last updated from:f7999e131a. Checks:1 NOTE, 7 WARNING, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksNOTE263
linux-devel-x86_64WARNING382
source / vignettesOK645
linux-release-x86_64WARNING441
macos-release-arm64WARNING285
macos-oldrel-arm64WARNING245
windows-develWARNING2035
windows-releaseWARNING1686
windows-oldrelWARNING1710
wasm-releaseOK241

Exports:clusterFoldSimilarityfindCommunitiesSimmilarityplotClustersGraphsimilarityHeatmap

Dependencies:abindaskpassbase64encBHBiobaseBiocGenericsBiocParallelbitopsbslibcachemcaToolscliclustercodetoolscommonmarkcowplotcpp11crosstalkcurldata.tableDelayedArraydeldirdigestdotCall64dplyrdqrngevaluatefarverfastDummiesfastmapfitdistrplusFNNfontawesomeformatRfsfutile.loggerfutile.optionsfuturefuture.applygenericsGenomicRangesggdendroggplot2ggrepelggridgesglobalsgluegoftestgplotsgridExtragtablegtoolsherehighrhtmltoolshtmlwidgetshttpuvhttricaigraphIRangesirlbaisobandjquerylibjsonliteKernSmoothknitrlabelinglambda.rlaterlatticelazyevallifecyclelistenvlmtestmagrittrMASSMatrixMatrixGenericsmatrixStatsmemoisemimeminiUInlmeopensslotelparallellypatchworkpbapplypillarpkgconfigplotlyplyrpngpolyclipprogressrpromisespurrrR6RANNrappdirsRColorBrewerRcppRcppAnnoyRcppArmadilloRcppEigenRcppHNSWRcppProgressRcppTOMLreshape2reticulaterlangrmarkdownROCRrprojrootRSpectraRtsneS4ArraysS4VectorsS7sassscalesscattermoresctransformSeqinfoSeuratSeuratObjectshinySingleCellExperimentsitmosnowsourcetoolsspspamSparseArrayspatstat.dataspatstat.explorespatstat.geomspatstat.randomspatstat.sparsespatstat.univarspatstat.utilsstringistringrSummarizedExperimentsurvivalsystensortibbletidyrtidyselecttinytexutf8uwotvctrsviridisLitewithrxfunxtableXVectoryamlzoo

ClusterFoldSimilarity: comparing cell-groups from independent single-cell experiments

Óscar González-Velasco

Rendered fromClusterFoldSimilarity.Rmdusingknitr::rmarkdownon May 30 2026.

Last update: 2026-02-01
Started: 2023-01-17