Package: ClusterFoldSimilarity 1.3.0

Oscar Gonzalez-Velasco

ClusterFoldSimilarity: Calculate similarity of clusters from different single cell samples using foldchanges

This package calculates a similarity coefficient using the fold changes of shared features (e.g. genes) among clusters of different samples/batches/datasets. The similarity coefficient is calculated using the dot-product (Hadamard product) of every pairwise combination of Fold Changes between a source cluster i of sample/dataset n and all the target clusters j in sample/dataset m

Authors:Oscar Gonzalez-Velasco [cre, aut]

ClusterFoldSimilarity_1.3.0.tar.gz
ClusterFoldSimilarity_1.3.0.zip(r-4.5)ClusterFoldSimilarity_1.3.0.zip(r-4.4)ClusterFoldSimilarity_1.3.0.zip(r-4.3)
ClusterFoldSimilarity_1.3.0.tgz(r-4.5-any)ClusterFoldSimilarity_1.3.0.tgz(r-4.4-any)ClusterFoldSimilarity_1.3.0.tgz(r-4.3-any)
ClusterFoldSimilarity_1.3.0.tar.gz(r-4.5-noble)ClusterFoldSimilarity_1.3.0.tar.gz(r-4.4-noble)
ClusterFoldSimilarity_1.3.0.tgz(r-4.4-emscripten)
ClusterFoldSimilarity.pdf |ClusterFoldSimilarity.html✨
ClusterFoldSimilarity/json (API)

# Install 'ClusterFoldSimilarity' in R:
install.packages('ClusterFoldSimilarity', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

On BioConductor:ClusterFoldSimilarity-1.3.0(bioc 3.21)ClusterFoldSimilarity-1.2.0(bioc 3.20)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

singlecellclusteringfeatureextractiongraphandnetworkgenetargetrnaseq

4.44 score 11 scripts 128 downloads 4 exports 168 dependencies

Last updated 4 months agofrom:60167ea8b5. Checks:1 OK, 7 WARNING. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKFeb 17 2025
R-4.5-winWARNINGFeb 17 2025
R-4.5-macWARNINGFeb 17 2025
R-4.5-linuxWARNINGFeb 17 2025
R-4.4-winWARNINGFeb 17 2025
R-4.4-macWARNINGFeb 17 2025
R-4.3-winWARNINGFeb 17 2025
R-4.3-macWARNINGFeb 17 2025

Exports:clusterFoldSimilarityfindCommunitiesSimmilarityplotClustersGraphsimilarityHeatmap

Dependencies:abindaskpassbase64encBHBiobaseBiocGenericsBiocParallelbitopsbslibcachemcaToolscliclustercodetoolscolorspacecommonmarkcowplotcpp11crayoncrosstalkcurldata.tableDelayedArraydeldirdigestdotCall64dplyrdqrngevaluatefansifarverfastDummiesfastmapfitdistrplusFNNfontawesomeformatRfsfutile.loggerfutile.optionsfuturefuture.applygenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesggdendroggplot2ggrepelggridgesglobalsgluegoftestgplotsgridExtragtablegtoolsherehighrhtmltoolshtmlwidgetshttpuvhttricaigraphIRangesirlbaisobandjquerylibjsonliteKernSmoothknitrlabelinglambda.rlaterlatticelazyevalleidenbaselifecyclelistenvlmtestmagrittrMASSMatrixMatrixGenericsmatrixStatsmemoisemgcvmimeminiUImunsellnlmeopensslparallellypatchworkpbapplypillarpkgconfigplotlyplyrpngpolyclipprogressrpromisespurrrR6RANNrappdirsRColorBrewerRcppRcppAnnoyRcppArmadilloRcppEigenRcppHNSWRcppProgressRcppTOMLreshape2reticulaterlangrmarkdownROCRrprojrootRSpectraRtsneS4ArraysS4VectorssassscalesscattermoresctransformSeuratSeuratObjectshinySingleCellExperimentsitmosnowsourcetoolsspspamSparseArrayspatstat.dataspatstat.explorespatstat.geomspatstat.randomspatstat.sparsespatstat.univarspatstat.utilsstringistringrSummarizedExperimentsurvivalsystensortibbletidyrtidyselecttinytexUCSC.utilsutf8uwotvctrsviridisLitewithrxfunxtableXVectoryamlzoo

ClusterFoldSimilarity: comparing cell-groups from independent single-cell experiments

Óscar González-Velasco

Rendered fromClusterFoldSimilarity.Rmdusingknitr::rmarkdownon Feb 17 2025.

Last update: 2024-05-07
Started: 2023-01-17