Package: ClusterFoldSimilarity 1.3.0

Oscar Gonzalez-Velasco

ClusterFoldSimilarity: Calculate similarity of clusters from different single cell samples using foldchanges

This package calculates a similarity coefficient using the fold changes of shared features (e.g. genes) among clusters of different samples/batches/datasets. The similarity coefficient is calculated using the dot-product (Hadamard product) of every pairwise combination of Fold Changes between a source cluster i of sample/dataset n and all the target clusters j in sample/dataset m

Authors:Oscar Gonzalez-Velasco [cre, aut]

ClusterFoldSimilarity_1.3.0.tar.gz
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ClusterFoldSimilarity_1.3.0.tgz(r-4.4-any)ClusterFoldSimilarity_1.3.0.tgz(r-4.3-any)
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ClusterFoldSimilarity.pdf |ClusterFoldSimilarity.html✨
ClusterFoldSimilarity/json (API)

# Install 'ClusterFoldSimilarity' in R:
install.packages('ClusterFoldSimilarity', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

On BioConductor:ClusterFoldSimilarity-1.3.0(bioc 3.21)ClusterFoldSimilarity-1.2.0(bioc 3.20)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

singlecellclusteringfeatureextractiongraphandnetworkgenetargetrnaseq

4.59 score 11 scripts 106 downloads 4 exports 169 dependencies

Last updated 2 months agofrom:60167ea8b5. Checks:OK: 1 WARNING: 6. Indexed: yes.

TargetResultDate
Doc / VignettesOKDec 19 2024
R-4.5-winWARNINGDec 19 2024
R-4.5-linuxWARNINGDec 19 2024
R-4.4-winWARNINGDec 19 2024
R-4.4-macWARNINGDec 19 2024
R-4.3-winWARNINGDec 19 2024
R-4.3-macWARNINGDec 19 2024

Exports:clusterFoldSimilarityfindCommunitiesSimmilarityplotClustersGraphsimilarityHeatmap

Dependencies:abindaskpassbase64encBHBiobaseBiocGenericsBiocParallelbitopsbslibcachemcaToolscliclustercodetoolscolorspacecommonmarkcowplotcpp11crayoncrosstalkcurldata.tableDelayedArraydeldirdigestdotCall64dplyrdqrngevaluatefansifarverfastDummiesfastmapfitdistrplusFNNfontawesomeformatRfsfutile.loggerfutile.optionsfuturefuture.applygenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesggdendroggplot2ggrepelggridgesglobalsgluegoftestgplotsgridExtragtablegtoolsherehighrhtmltoolshtmlwidgetshttpuvhttricaigraphIRangesirlbaisobandjquerylibjsonliteKernSmoothknitrlabelinglambda.rlaterlatticelazyevalleidenlifecyclelistenvlmtestmagrittrMASSMatrixMatrixGenericsmatrixStatsmemoisemgcvmimeminiUImunsellnlmeopensslparallellypatchworkpbapplypillarpkgconfigplotlyplyrpngpolyclipprogressrpromisespurrrR6RANNrappdirsRColorBrewerRcppRcppAnnoyRcppArmadilloRcppEigenRcppHNSWRcppProgressRcppTOMLreshape2reticulaterlangrmarkdownROCRrprojrootRSpectraRtsneS4ArraysS4VectorssassscalesscattermoresctransformSeuratSeuratObjectshinySingleCellExperimentsitmosnowsourcetoolsspspamSparseArrayspatstat.dataspatstat.explorespatstat.geomspatstat.randomspatstat.sparsespatstat.univarspatstat.utilsstringistringrSummarizedExperimentsurvivalsystensortibbletidyrtidyselecttinytexUCSC.utilsutf8uwotvctrsviridisLitewithrxfunxtableXVectoryamlzlibbioczoo

ClusterFoldSimilarity: comparing cell-groups from independent single-cell experiments

Óscar González-Velasco

Rendered fromClusterFoldSimilarity.Rmdusingknitr::rmarkdownon Dec 19 2024.

Last update: 2024-05-07
Started: 2023-01-17