Package: ChromHeatMap 1.59.0
ChromHeatMap: Heat map plotting by genome coordinate
The ChromHeatMap package can be used to plot genome-wide data (e.g. expression, CGH, SNP) along each strand of a given chromosome as a heat map. The generated heat map can be used to interactively identify probes and genes of interest.
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ChromHeatMap_1.59.0.tar.gz
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ChromHeatMap.pdf |ChromHeatMap.html✨
ChromHeatMap/json (API)
# Install 'ChromHeatMap' in R: |
install.packages('ChromHeatMap', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
- ALLs.chr22 - Chromosome 22 subset of ALL data for ALL1/AF4 and E2A/PBX1
- chrdata - The ALLs.chr22 ExpressionSet, reformatted as a ChrStrandData object
- cytobands - Cytoband location information
- stains - Cytoband display information
On BioConductor:ChromHeatMap-1.59.0(bioc 3.20)ChromHeatMap-1.58.0(bioc 3.19)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 2 months agofrom:798c610f50
Exports:chrHeatMapchrNamescreateChrMatrixdrawMapDendrograbChrMapProbesmakeChrStrandDatamakeRangedDataListplotChrMap
Dependencies:abindannotateAnnotationDbiaskpassBHBiobaseBiocGenericsBiocIOBiocParallelBiostringsbitbit64bitopsblobcachemclicodetoolscpp11crayoncurlDBIDelayedArrayfastmapformatRfutile.loggerfutile.optionsGenomeInfoDbGenomeInfoDbDataGenomicAlignmentsGenomicRangesgluehttrIRangesjsonliteKEGGRESTlambda.rlatticelifecycleMatrixMatrixGenericsmatrixStatsmemoisemimeopensslpkgconfigplogrpngR6RCurlrestfulrRhtslibrjsonrlangRsamtoolsRSQLitertracklayerS4ArraysS4VectorssnowSparseArraySummarizedExperimentsysUCSC.utilsvctrsXMLxtableXVectoryamlzlibbioc