Package: ChIPComp 1.37.0

Li Chen

ChIPComp: Quantitative comparison of multiple ChIP-seq datasets

ChIPComp detects differentially bound sharp binding sites across multiple conditions considering matching control.

Authors:Hao Wu, Li Chen, Zhaohui S.Qin, Chi Wang

ChIPComp_1.37.0.tar.gz
ChIPComp_1.37.0.zip(r-4.5)ChIPComp_1.37.0.zip(r-4.4)ChIPComp_1.37.0.zip(r-4.3)
ChIPComp_1.37.0.tgz(r-4.4-x86_64)ChIPComp_1.37.0.tgz(r-4.4-arm64)ChIPComp_1.37.0.tgz(r-4.3-x86_64)ChIPComp_1.37.0.tgz(r-4.3-arm64)
ChIPComp_1.37.0.tar.gz(r-4.5-noble)ChIPComp_1.37.0.tar.gz(r-4.4-noble)
ChIPComp_1.37.0.tgz(r-4.4-emscripten)ChIPComp_1.37.0.tgz(r-4.3-emscripten)
ChIPComp.pdf |ChIPComp.html✨
ChIPComp/json (API)
NEWS

# Install 'ChIPComp' in R:
install.packages('ChIPComp', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Datasets:

On BioConductor:ChIPComp-1.37.0(bioc 3.21)ChIPComp-1.36.0(bioc 3.20)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

chipseqsequencingtranscriptiongeneticscoveragemultiplecomparisondataimport

4.49 score 51 scripts 324 downloads 3 mentions 3 exports 55 dependencies

Last updated 2 months agofrom:3fbdb068ee. Checks:OK: 1 NOTE: 8. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 29 2024
R-4.5-win-x86_64NOTENov 29 2024
R-4.5-linux-x86_64NOTENov 29 2024
R-4.4-win-x86_64NOTENov 29 2024
R-4.4-mac-x86_64NOTENov 29 2024
R-4.4-mac-aarch64NOTENov 29 2024
R-4.3-win-x86_64NOTENov 29 2024
R-4.3-mac-x86_64NOTENov 29 2024
R-4.3-mac-aarch64NOTENov 29 2024

Exports:ChIPCompmakeConfmakeCountSet

Dependencies:abindaskpassBHBiobaseBiocGenericsBiocIOBiocParallelBiostringsbitopsBSgenomeBSgenome.Hsapiens.UCSC.hg19BSgenome.Mmusculus.UCSC.mm9codetoolscpp11crayoncurlDelayedArrayformatRfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomeInfoDbDataGenomicAlignmentsGenomicRangeshttrIRangesjsonlitelambda.rlatticelimmaMatrixMatrixGenericsmatrixStatsmimeopensslR6RCurlrestfulrRhtslibrjsonRsamtoolsrtracklayerS4ArraysS4VectorssnowSparseArraystatmodSummarizedExperimentsysUCSC.utilsXMLXVectoryamlzlibbioc

ChIPComp

Rendered fromChIPComp.Rnwusingutils::Sweaveon Nov 29 2024.

Last update: 2020-04-25
Started: 2015-08-13