Package: ChIPComp 1.41.0

Li Chen

ChIPComp: Quantitative comparison of multiple ChIP-seq datasets

ChIPComp detects differentially bound sharp binding sites across multiple conditions considering matching control.

Authors:Hao Wu, Li Chen, Zhaohui S.Qin, Chi Wang

# Install 'ChIPComp' in R:

install.packages('ChIPComp', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Datasets:

On BioConductor:ChIPComp-1.41.0(bioc 3.23)ChIPComp-1.40.0(bioc 3.22)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

Last updated from:6f90f756b7. Checks:1 ERROR, 6 FAIL, 2 OK, 5 NOTE. Indexed: yes.

The latest version of this package failed to build. Look at thebuild logs for more information.

Target	Result	Time
bioc-checks	ERROR	309
linux-devel-arm64	FAIL	219
linux-devel-x86_64	FAIL	321
source / vignettes	OK	416
linux-release-arm64	NOTE	410
linux-release-x86_64	NOTE	482
macos-release-arm64	FAIL	132
macos-release-x86_64	FAIL	277
macos-oldrel-arm64	NOTE	323
macos-oldrel-x86_64	NOTE	549
windows-devel	FAIL	203
windows-release	FAIL	157
windows-oldrel	NOTE	335
wasm-release	OK	251

Last update: 2020-04-25
Started: 2015-08-13

Help page	Topics
Detect differential binding sites for ChIP sequencing data	ChIPComp-package
Perform hypothesis testing to detect differential binding sites	ChIPComp
make configurations for experimental design written in csv sheet	makeConf
make differential binding sites data frame	makeCountSet
plot correlation between log ChIP read counts and smoothing control counts in common binding sites.	plot.ChIPComp
Print top ranked differential binding sites	print.ChIPComp
A 'ChIPComp' object.	seqData