Package: CellMixS 1.21.0

Almut Lütge

CellMixS: Evaluate Cellspecific Mixing

CellMixS provides metrics and functions to evaluate batch effects, data integration and batch effect correction in single cell trancriptome data with single cell resolution. Results can be visualized and summarised on different levels, e.g. on cell, celltype or dataset level.

Authors:Almut Lütge [aut, cre]

CellMixS_1.21.0.tar.gz
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CellMixS.pdf |CellMixS.html✨
CellMixS/json (API)
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Bug tracker:https://github.com/almutlue/cellmixs/issues

On BioConductor:CellMixS-1.21.0(bioc 3.20)CellMixS-1.20.0(bioc 3.19)

bioconductor-package

14 exports 0.82 score 109 dependencies 1 mentions

Last updated 2 months agofrom:29434d2bc1

Exports:cmsentropyevalIntegrationisildfDiffldfScelocStructuremixMetricvisClustervisGroupvisHistvisIntegrationvisMetricvisOverview

Dependencies:abindaskpassbeachmatbeeswarmBHBiobaseBiocGenericsBiocNeighborsBiocParallelBiocSingularCairoclicodetoolscolorspacecowplotcpp11crayoncurlDelayedArrayDelayedMatrixStatsdplyrdqrngfansifarverFNNformatRfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesggbeeswarmggplot2ggrastrggrepelggridgesgluegridExtragtablehttrIRangesirlbaisobandjsonlitekSampleslabelinglambda.rlatticelifecyclemagrittrMASSMatrixMatrixGenericsmatrixStatsmgcvmimemunsellnlmeopensslpheatmappillarpkgconfigpngpurrrR6raggRColorBrewerRcppRcppAnnoyRcppEigenRcppHNSWRcppMLRcppProgressrlangRSpectrarsvdRtsneS4ArraysS4VectorsScaledMatrixscalesscaterscuttleSingleCellExperimentsitmosnowSparseArraysparseMatrixStatsstringistringrSummarizedExperimentSuppDistssyssystemfontstextshapingtibbletidyrtidyselectUCSC.utilsutf8uwotvctrsviporviridisviridisLitewithrXVectorzlibbioc