Introduction | Installation | Available data | Normal adult tissues | GTEX data | Normal tissue gene expression | Methylation in normal adult tissues | Testis scRNAseq data | Oocytes scRNAseq data | Human Protein Atlas scRNAseq data | Human Protein Atlas cell type specificity data | Fetal cells | Fetal germ cell scRNAseq data | Methylation in fetal germ cells (scWGBS) | Embryonic stem cells RNA-Seq data | Methylation in embryonic stem cells | Early embryo scRNA-seq data | Methylation in early embryo | Demethylated gene expression | Tumor cells | CCLE data | TCGA data | CT genes determination | All genes | CT genes | Session information
Package: CTdata 1.13.0
Laurent Gatto
CTdata: Data companion to CTexploreR
Data from publicly available databases (GTEx, CCLE, TCGA and ENCODE) that go with CTexploreR in order to re-define a comprehensive and thoroughly curated list of CT genes and their main characteristics.
Authors:
CTdata_1.13.0.tar.gz
CTdata_1.13.0.zip(r-4.7)CTdata_1.13.0.zip(r-4.6)CTdata_1.13.0.zip(r-4.5)
CTdata_1.13.0.tgz(r-4.6-any)CTdata_1.13.0.tgz(r-4.5-any)
CTdata_1.13.0.tar.gz(r-4.7-any)CTdata_1.13.0.tar.gz(r-4.6-any)
CTdata_1.13.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
CTdata/json (API)
| # Install 'CTdata' in R: |
| install.packages('CTdata', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/uclouvain-cbio/ctdata/issues
On BioConductor:CTdata-1.13.0(bioc 3.24)CTdata-1.12.0(bioc 3.23)
transcriptomicsepigeneticsgeneexpressiondataimportexperimenthubsoftware
Last updated from:462bb0c6e2. Checks:1 ERROR, 9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | ERROR | 162 | ||
| linux-devel-x86_64 | OK | 245 | ||
| source / vignettes | OK | 476 | ||
| linux-release-x86_64 | OK | 256 | ||
| macos-release-arm64 | OK | 132 | ||
| macos-oldrel-arm64 | OK | 227 | ||
| windows-devel | OK | 140 | ||
| windows-release | OK | 146 | ||
| windows-oldrel | OK | 154 | ||
| wasm-release | OK | 128 |
Exports:all_genesCCLE_correlation_matrixCCLE_dataCT_genesCT_mean_methylation_in_tissuesCT_methylation_in_tissuesCTdataDAC_treated_cellsDAC_treated_cells_multimappingembryo_sce_Petropoulosembryo_sce_ZhuFGC_sceGTEX_datahESC_dataHPA_cell_type_specificitiesmean_methylation_in_embryomean_methylation_in_FGCmean_methylation_in_hESCmean_methylation_in_tissuesmethylation_in_embryomethylation_in_FGCmethylation_in_hESCmethylation_in_tissuesnormal_tissues_multimapping_dataoocytes_scescRNAseq_HPATCGA_CT_methylationTCGA_methylationTCGA_TPMtestis_sce
Dependencies:AnnotationDbiAnnotationHubaskpassBiobaseBiocBaseUtilsBiocFileCacheBiocGenericsBiocManagerBiocVersionBiostringsbitbit64blobcachemclicpp11crayoncurlDBIdbplyrdplyrExperimentHubfastmapfilelockgenericsgluehttrhttr2IRangesjsonliteKEGGRESTlifecyclemagrittrmemoisemimeopensslpillarpkgconfigpngpurrrR6rappdirsrlangRSQLiteS4VectorsSeqinfostringistringrsystibbletidyrtidyselectutf8vctrswithrXVectoryaml
