Package: CRISPRball 1.3.1
CRISPRball: Shiny Application for Interactive CRISPR Screen Visualization, Exploration, Comparison, and Filtering
A Shiny application for visualization, exploration, comparison, and filtering of CRISPR screens analyzed with MAGeCK RRA or MLE. Features include interactive plots with on-click labeling, full customization of plot aesthetics, data upload and/or download, and much more. Quickly and easily explore your CRISPR screen results and generate publication-quality figures in seconds.
Authors:
CRISPRball_1.3.1.tar.gz
CRISPRball_1.3.1.zip(r-4.5)CRISPRball_1.3.1.zip(r-4.4)CRISPRball_1.1.0.zip(r-4.3)
CRISPRball_1.3.1.tgz(r-4.4-any)CRISPRball_1.1.0.tgz(r-4.3-any)
CRISPRball_1.3.1.tar.gz(r-4.5-noble)CRISPRball_1.3.1.tar.gz(r-4.4-noble)
CRISPRball_1.3.1.tgz(r-4.4-emscripten)CRISPRball_1.1.0.tgz(r-4.3-emscripten)
CRISPRball.pdf |CRISPRball.html✨
CRISPRball/json (API)
NEWS
# Install 'CRISPRball' in R: |
install.packages('CRISPRball', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/j-andrews7/crisprball/issues
- depmap_22q1_TPM - DepMap expression data
- depmap_22q1_cn - DepMap copy number data
- depmap_22q1_crispr - DepMap CRISPR screen data
- depmap_22q1_crispr_rnai - DepMap CRISPR & RNAi screen data
- depmap_22q1_rnai - DepMap RNAi screen data
On BioConductor:CRISPRball-1.3.0(bioc 3.21)CRISPRball-1.2.0(bioc 3.20)
softwareshinyappscrisprqualitycontrolvisualizationguicrispr-screendata-visualizationinteractive-visualizationsmageckplotlyscreeningshiny
Last updated 20 days agofrom:49e2945a18. Checks:OK: 1 WARNING: 4 NOTE: 2. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Nov 02 2024 |
R-4.5-win | WARNING | Nov 02 2024 |
R-4.5-linux | WARNING | Nov 02 2024 |
R-4.4-win | WARNING | Nov 02 2024 |
R-4.4-mac | WARNING | Nov 02 2024 |
R-4.3-win | NOTE | Sep 28 2024 |
R-4.3-mac | NOTE | Sep 28 2024 |
Exports:build_depmap_dbCRISPRballgene_ingressget_depmap_essentialityget_depmap_plot_dataplot_barplot_correlation_heatmapplot_depmap_cnplot_depmap_dependencyplot_depmap_expressionplot_depmap_lineagesplot_histplot_lawnplot_pca_biplotplot_rankplot_volcanoread_mle_gene_summary
Dependencies:abindAnnotationDbiAnnotationHubapeaplotaskpassassortheadbabelgenebase64encbeachmatBHBiobaseBiocFileCacheBiocGenericsBiocManagerBiocParallelBiocSingularBiocVersionBiostringsbitbit64bitopsblobbslibcachemcirclizecliclisymbolsclueclusterclusterProfilercodetoolscolorspacecolourpickercommonmarkComplexHeatmapcowplotcpp11crayoncrosstalkcurldata.tableDBIdbplyrDelayedArrayDelayedMatrixStatsdepmapdigestdittoSeqdoParallelDOSEdplyrdqrngDTenrichplotevaluateExperimentHubfansifarverfastmapfastmatchfgseafilelockfontawesomeforeachformatRfsfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesGetoptLongggforceggfunggnewscaleggplot2ggplotifyggrepelggridgesggtangleggtreeGlobalOptionsglueGO.dbGOSemSimgraphgridExtragridGraphicsgsongtablehighrhtmltoolshtmlwidgetshttpuvhttrhttr2igraphInteractiveComplexHeatmapIRangesirlbaisobanditeratorsjquerylibjsonlitekableExtraKEGGgraphKEGGRESTknitrlabelinglambda.rlaterlatticelazyevallifecycleMAGeCKFlutemagrittrMASSMatrixMatrixGenericsmatrixStatsmemoisemgcvmimeminiUImsigdbrmunsellnlmeopensslorg.Hs.eg.dbpatchworkpathviewPCAtoolspheatmappillarpkgconfigplogrplotlyplyrpngpolyclippromisespurrrqvalueR.methodsS3R.ooR.utilsR6rappdirsRColorBrewerRcppRcppEigenRCurlreshape2RgraphvizrjsonrlangrmarkdownRSQLiterstudioapirsvdS4ArraysS4VectorssassScaledMatrixscalesscatterpieshapeshinyshinyBSshinycssloadersshinyjquishinyjsshinyWidgetsSingleCellExperimentsitmosnowsourcetoolsSparseArraysparseMatrixStatsstringistringrSummarizedExperimentsvglitesyssystemfontstibbletidyrtidyselecttidytreetinytextreeiotweenrUCSC.utilsutf8vctrsviridisLitewithrxfunXMLxml2xtableXVectoryamlyulab.utilszlibbioc