Package: CRISPRball 1.3.1

Jared Andrews

CRISPRball: Shiny Application for Interactive CRISPR Screen Visualization, Exploration, Comparison, and Filtering

A Shiny application for visualization, exploration, comparison, and filtering of CRISPR screens analyzed with MAGeCK RRA or MLE. Features include interactive plots with on-click labeling, full customization of plot aesthetics, data upload and/or download, and much more. Quickly and easily explore your CRISPR screen results and generate publication-quality figures in seconds.

Authors:Jared Andrews [aut, cre], Jacob Steele [ctb]

CRISPRball_1.3.1.tar.gz
CRISPRball_1.3.1.zip(r-4.5)CRISPRball_1.3.1.zip(r-4.4)CRISPRball_1.1.0.zip(r-4.3)
CRISPRball_1.3.1.tgz(r-4.4-any)CRISPRball_1.1.0.tgz(r-4.3-any)
CRISPRball_1.3.1.tar.gz(r-4.5-noble)CRISPRball_1.3.1.tar.gz(r-4.4-noble)
CRISPRball_1.3.1.tgz(r-4.4-emscripten)CRISPRball_1.1.0.tgz(r-4.3-emscripten)
CRISPRball.pdf |CRISPRball.html
CRISPRball/json (API)
NEWS

# Install 'CRISPRball' in R:
install.packages('CRISPRball', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/j-andrews7/crisprball/issues

Datasets:

On BioConductor:CRISPRball-1.3.0(bioc 3.21)CRISPRball-1.2.0(bioc 3.20)

softwareshinyappscrisprqualitycontrolvisualizationguicrispr-screendata-visualizationinteractive-visualizationsmageckplotlyscreeningshiny

5.98 score 8 stars 24 scripts 127 downloads 17 exports 207 dependencies

Last updated 20 days agofrom:49e2945a18. Checks:OK: 1 WARNING: 4 NOTE: 2. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 02 2024
R-4.5-winWARNINGNov 02 2024
R-4.5-linuxWARNINGNov 02 2024
R-4.4-winWARNINGNov 02 2024
R-4.4-macWARNINGNov 02 2024
R-4.3-winNOTESep 28 2024
R-4.3-macNOTESep 28 2024

Exports:build_depmap_dbCRISPRballgene_ingressget_depmap_essentialityget_depmap_plot_dataplot_barplot_correlation_heatmapplot_depmap_cnplot_depmap_dependencyplot_depmap_expressionplot_depmap_lineagesplot_histplot_lawnplot_pca_biplotplot_rankplot_volcanoread_mle_gene_summary

Dependencies:abindAnnotationDbiAnnotationHubapeaplotaskpassassortheadbabelgenebase64encbeachmatBHBiobaseBiocFileCacheBiocGenericsBiocManagerBiocParallelBiocSingularBiocVersionBiostringsbitbit64bitopsblobbslibcachemcirclizecliclisymbolsclueclusterclusterProfilercodetoolscolorspacecolourpickercommonmarkComplexHeatmapcowplotcpp11crayoncrosstalkcurldata.tableDBIdbplyrDelayedArrayDelayedMatrixStatsdepmapdigestdittoSeqdoParallelDOSEdplyrdqrngDTenrichplotevaluateExperimentHubfansifarverfastmapfastmatchfgseafilelockfontawesomeforeachformatRfsfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesGetoptLongggforceggfunggnewscaleggplot2ggplotifyggrepelggridgesggtangleggtreeGlobalOptionsglueGO.dbGOSemSimgraphgridExtragridGraphicsgsongtablehighrhtmltoolshtmlwidgetshttpuvhttrhttr2igraphInteractiveComplexHeatmapIRangesirlbaisobanditeratorsjquerylibjsonlitekableExtraKEGGgraphKEGGRESTknitrlabelinglambda.rlaterlatticelazyevallifecycleMAGeCKFlutemagrittrMASSMatrixMatrixGenericsmatrixStatsmemoisemgcvmimeminiUImsigdbrmunsellnlmeopensslorg.Hs.eg.dbpatchworkpathviewPCAtoolspheatmappillarpkgconfigplogrplotlyplyrpngpolyclippromisespurrrqvalueR.methodsS3R.ooR.utilsR6rappdirsRColorBrewerRcppRcppEigenRCurlreshape2RgraphvizrjsonrlangrmarkdownRSQLiterstudioapirsvdS4ArraysS4VectorssassScaledMatrixscalesscatterpieshapeshinyshinyBSshinycssloadersshinyjquishinyjsshinyWidgetsSingleCellExperimentsitmosnowsourcetoolsSparseArraysparseMatrixStatsstringistringrSummarizedExperimentsvglitesyssystemfontstibbletidyrtidyselecttidytreetinytextreeiotweenrUCSC.utilsutf8vctrsviridisLitewithrxfunXMLxml2xtableXVectoryamlyulab.utilszlibbioc

CRISPRball Quick Start

Rendered fromCRISPRball.Rmdusingknitr::rmarkdownon Nov 02 2024.

Last update: 2023-10-18
Started: 2022-05-03