Package: CONFESS 1.35.0

Diana LOW

CONFESS: Cell OrderiNg by FluorEScence Signal

Single Cell Fluidigm Spot Detector.

Authors:Diana LOW and Efthimios MOTAKIS

CONFESS_1.35.0.tar.gz
CONFESS_1.35.0.zip(r-4.5)CONFESS_1.35.0.zip(r-4.4)
CONFESS_1.35.0.tgz(r-4.4-any)
CONFESS_1.35.0.tar.gz(r-4.5-noble)CONFESS_1.35.0.tar.gz(r-4.4-noble)
CONFESS_1.35.0.tgz(r-4.4-emscripten)
CONFESS.pdf |CONFESS.html✨
CONFESS/json (API)
NEWS

# Install 'CONFESS' in R:

install.packages('CONFESS', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Datasets:

Results - Results
clu - Clu
estimates - Estimates
estimates.2 - Estimates.2
files - Files
step1 - Step1
step2 - Step2
step2.1 - Step2.1
step3 - Step3
step3.1 - Step3.1
step4 - Step4
steps2_4 - Steps2_4

On BioConductor:CONFESS-1.33.0(bioc 3.20)CONFESS-1.32.0(bioc 3.19)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

immunooncology geneexpression dataimport cellbiology clustering rnaseq qualitycontrol visualization timecourse regression classification

3.60 score 2 scripts 210 downloads 17 exports 141 dependencies

Last updated 25 days agofrom:be5739f224. Checks:OK: 1 WARNING: 4. Indexed: yes.

Target	Result	Date
Doc / Vignettes	OK	Oct 30 2024
R-4.5-win	WARNING	Oct 30 2024
R-4.5-linux	WARNING	Oct 30 2024
R-4.4-win	WARNING	Oct 30 2024
R-4.4-mac	WARNING	Oct 30 2024

Exports:cluster2outlier createFluo defineLocClusters Fluo_adjustment Fluo_CV_modeling Fluo_CV_prep Fluo_inspection Fluo_modeling Fluo_ordering FluoSelection_byRun getFluo getFluo_byRun LocationMatrix pathEstimator readFiles simcells spotEstimator

Dependencies:abind backports base64enc BH Biobase BiocGenerics bitops bmp bslib cachem changepoint checkmate cli cluster codetools colorspace contrast cpp11 cytolib data.table DEoptimR digest EBImage ecp evaluate fansi farver fastmap feature fftwtools flexmix flowClust flowCore flowMeans flowMerge flowPeaks FNN fontawesome foreach foreign Formula fs ggplot2 glue graph gridExtra gtable highr Hmisc htmlTable htmltools htmlwidgets isoband iterators jpeg jquerylib jsonlite kernlab KernSmooth knitr ks labeling lattice lifecycle limma locfit magrittr MASS Matrix MatrixModels matrixStats mclust memoise mgcv mime misc3d modeltools moments multcomp multicool multitaper munsell mvtnorm nlme nnet outliers pcaPP pillar pkgconfig plot3D plotrix plyr png polspline pracma quantreg R6 rappdirs raster RColorBrewer Rcpp RCurl readbitmap reshape2 Rgraphviz Rhdf5lib rlang rmarkdown rms robustbase rpart RProtoBufLib rrcov rstudioapi S4Vectors SamSPECTRAL sandwich sass scales snow sp SparseM statmod stringi stringr survival terra TH.data tibble tiff tinytex utf8 vctrs viridis viridisLite waveslim wavethresh withr xfun yaml zoo

CONFESS

Rendered fromvignette_tex.Rnwusingknitr::knitron Oct 30 2024.

Last update: 2016-04-11
Started: 2016-03-29

CONFESS

Diana LOW, Efthymios MOTAKIS

Rendered fromvignette.Rmdusingknitr::rmarkdownon Oct 30 2024.

Last update: 2019-02-26
Started: 2016-03-29

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
clu	clu
cluster2outlier	cluster2outlier
createFluo	createFluo
defineLocClusters	defineLocClusters
estimates	estimates
estimates.2	estimates.2
files	files
Fluo_adjustment	Fluo_adjustment
Fluo_CV_modeling	Fluo_CV_modeling
Fluo_CV_prep	Fluo_CV_prep
Fluo_inspection	Fluo_inspection
Fluo_modeling	Fluo_modeling
Fluo_ordering	Fluo_ordering
FluoSelection_byRun	FluoSelection_byRun
getFluo	getFluo
getFluo_byRun	getFluo_byRun
LocationMatrix	LocationMatrix
pathEstimator	pathEstimator
readFiles	readFiles
Results	Results
simcells	simcells
spotEstimator	spotEstimator
step1	step1
step2	step2
step2.1	step2.1
step3	step3
step3.1	step3.1
step4	step4
steps2_4	steps2_4

Usage by other packages (reverse dependencies)