Package: CNVRanger 1.29.1

Ludwig Geistlinger

CNVRanger: Summarization and expression/phenotype association of CNV ranges

The CNVRanger package implements a comprehensive tool suite for CNV analysis. This includes functionality for summarizing individual CNV calls across a population, assessing overlap with functional genomic regions, and association analysis with gene expression and quantitative phenotypes.

Authors:Ludwig Geistlinger [aut, cre], Vinicius Henrique da Silva [aut], Marcel Ramos [ctb], Levi Waldron [ctb]

CNVRanger_1.29.1.tar.gz
CNVRanger_1.29.1.zip(r-4.7)CNVRanger_1.29.1.zip(r-4.6)CNVRanger_1.29.1.zip(r-4.5)
CNVRanger_1.29.1.tgz(r-4.6-any)CNVRanger_1.29.1.tgz(r-4.5-any)
CNVRanger_1.29.1.tar.gz(r-4.7-any)CNVRanger_1.29.1.tar.gz(r-4.6-any)
CNVRanger_1.29.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
CNVRanger/json (API)
NEWS

# Install 'CNVRanger' in R:
install.packages('CNVRanger', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/waldronlab/cnvranger/issues

On BioConductor:CNVRanger-1.29.1(bioc 3.24)CNVRanger-1.28.0(bioc 3.23)

copynumbervariationdifferentialexpressiongeneexpressiongenomewideassociationgenomicvariationmicroarrayrnaseqsnpbioconductor-packageu24ca289073

5.86 score 8 stars 13 scripts 401 downloads 1 mentions 10 exports 66 dependencies

Last updated from:53d628f90b. Checks:8 NOTE, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksNOTE346
linux-devel-x86_64NOTE482
source / vignettesOK577
linux-release-x86_64NOTE560
macos-release-arm64NOTE223
macos-oldrel-arm64NOTE274
windows-develNOTE1102
windows-releaseNOTE1084
windows-oldrelNOTE1197
wasm-releaseOK322

Exports:cnvEQTLcnvGWAScnvOncoPrintgenerateGDSimportLrrBafplotEQTLplotManhattanplotRecurrentRegionspopulationRangessetupCnvGWAS

Dependencies:abindaskpassBHBiobaseBiocBaseUtilsBiocGenericsBiocParallelBiostringscalibrateclicodetoolscpp11crayoncurldata.tableDelayedArraydigestedgeRformatRfutile.loggerfutile.optionsGDSArraygdsfmtgenericsGenomeInfoDbGenomicRangesgluehttrIRangesjsonlitelambda.rlatticelifecyclelimmalocfitmagrittrMASSMatrixMatrixGenericsmatrixStatsmimeopensslplyrqqmanR6RaggedExperimentrappdirsRcppreshape2RhpcBLASctlrlangS4ArraysS4VectorsSeqArraySeqinfosnowSNPRelateSparseArraystatmodstringistringrSummarizedExperimentsysUCSC.utilsvctrsXVector

Summarization and quantitative trait analysis of CNV ranges

Vinicius Henrique da Silva, Ludwig Geistlinger

Rendered fromCNVRanger.Rmdusingknitr::rmarkdownon May 30 2026.

Last update: 2025-05-08
Started: 2018-10-17