Package: CNTools 1.61.0
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J. Zhang
CNTools: Convert segment data into a region by sample matrix to allow for other high level computational analyses.
This package provides tools to convert the output of segmentation analysis using DNAcopy to a matrix structure with overlapping segments as rows and samples as columns so that other computational analyses can be applied to segmented data
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CNTools.pdf |CNTools.html✨
CNTools/json (API)
# Install 'CNTools' in R: |
install.packages('CNTools', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
- geneInfo - Method that convert segment data into reduced segment matrix
- sampleData - Class "CNSeg" contains the output of DNACopy segmentation data that can be operated on by the associated methods
On BioConductor:CNTools-1.61.0(bioc 3.20)CNTools-1.60.0(bioc 3.19)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 2 months agofrom:8b8b7ab788
Exports:CNSegdiffBygenefiltergetCorgetDistgetRSmadFilterrsrs<-segBysegListsegList<-show
Dependencies:annotateAnnotationDbiaskpassBiobaseBiocGenericsBiostringsbitbit64blobcachemclicpp11crayoncurlDBIfastmapgenefilterGenomeInfoDbGenomeInfoDbDatagluehttrIRangesjsonliteKEGGRESTlatticelifecycleMatrixMatrixGenericsmatrixStatsmemoisemimeopensslpkgconfigplogrpngR6rlangRSQLiteS4VectorssurvivalsysUCSC.utilsvctrsXMLxtableXVectorzlibbioc