Package: CHRONOS 1.35.0

Panos Balomenos

CHRONOS: CHRONOS: A time-varying method for microRNA-mediated sub-pathway enrichment analysis

A package used for efficient unraveling of the inherent dynamic properties of pathways. MicroRNA-mediated subpathway topologies are extracted and evaluated by exploiting the temporal transition and the fold change activity of the linked genes/microRNAs.

Authors:Aristidis G. Vrahatis, Konstantina Dimitrakopoulou, Panos Balomenos

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CHRONOS.pdf |CHRONOS.html✨
CHRONOS/json (API)
NEWS

# Install 'CHRONOS' in R:
install.packages('CHRONOS', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Uses libs:
  • openjdk– OpenJDK Java runtime, using Hotspot JIT

On BioConductor:CHRONOS-1.35.0(bioc 3.21)CHRONOS-1.34.0(bioc 3.20)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

systemsbiologygraphandnetworkpathwayskeggopenjdk

3.82 score 11 scripts 213 downloads 3 mentions 16 exports 83 dependencies

Last updated 2 months agofrom:630e48db1b. Checks:OK: 2 NOTE: 3 ERROR: 2. Indexed: yes.

TargetResultDate
Doc / VignettesOKDec 18 2024
R-4.5-winNOTEDec 18 2024
R-4.5-linuxNOTEDec 18 2024
R-4.4-winNOTEDec 18 2024
R-4.4-macERRORDec 18 2024
R-4.3-winOKDec 18 2024
R-4.3-macERRORDec 18 2024

Exports:CHRONOSrunconvertMiRNANomenclatureconvertNomenclaturecreatePathwayGraphsdownloadKEGGPathwayListdownloadMiRecordsdownloadPathwaysextractLinearSubpathwaysextractNonLinearSubpathwaysgetEdgeTypesimportExpressionspathwayMeasuresscoreSubpathwayssubpathwayKEGGmapsubpathwayMiRNAsvisualizeResults

Dependencies:AnnotationDbiaskpassBHBiobaseBiocFileCacheBiocGenericsbiomaRtBiostringsbitbit64bitopsblobcachemcirclizeclicodetoolscolorspacecpp11crayoncurlDBIdbplyrdigestdoParalleldplyrfansifastmapfilelockforeachgenericsGenomeInfoDbGenomeInfoDbDataGlobalOptionsgluegraphhmshttrhttr2igraphIRangesiteratorsjsonliteKEGGRESTlatticelifecyclemagrittrMatrixmemoisemimeopensslopenxlsxpillarpkgconfigplogrpngprettyunitsprogresspurrrR6rappdirsRBGLRcppRCurlrJavarlangRSQLiteS4VectorsshapestringistringrsystibbletidyrtidyselectUCSC.utilsutf8vctrswithrXMLxml2XVectorzipzlibbioc

CHRONOS: A time-varying method for microRNA-mediated sub-pathway enrichment analysis

Aristidis G. Vrahatis, Konstantina Dimitrakopoulou, Panos Balomenos

Rendered fromCHRONOS.Rmdusingknitr::rmarkdownon Dec 18 2024.

Last update: 2017-04-05
Started: 2016-04-18