Package: CHRONOS 1.35.0

Panos Balomenos

CHRONOS: CHRONOS: A time-varying method for microRNA-mediated sub-pathway enrichment analysis

A package used for efficient unraveling of the inherent dynamic properties of pathways. MicroRNA-mediated subpathway topologies are extracted and evaluated by exploiting the temporal transition and the fold change activity of the linked genes/microRNAs.

Authors:Aristidis G. Vrahatis, Konstantina Dimitrakopoulou, Panos Balomenos

CHRONOS_1.35.0.tar.gz
CHRONOS_1.35.0.zip(r-4.5)CHRONOS_1.35.0.zip(r-4.4)CHRONOS_1.35.0.zip(r-4.3)
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CHRONOS_1.35.0.tar.gz(r-4.5-noble)CHRONOS_1.35.0.tar.gz(r-4.4-noble)
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CHRONOS.pdf |CHRONOS.html✨
CHRONOS/json (API)
NEWS

# Install 'CHRONOS' in R:
install.packages('CHRONOS', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))
Uses libs:
  • openjdk– OpenJDK Java runtime, using Hotspot JIT

On BioConductor:CHRONOS-1.35.0(bioc 3.21)CHRONOS-1.34.0(bioc 3.20)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

systemsbiologygraphandnetworkpathwayskeggopenjdk

3.86 score 12 scripts 236 downloads 3 mentions 16 exports 82 dependencies

Last updated 4 months agofrom:630e48db1b. Checks:2 OK, 3 NOTE, 3 ERROR. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKFeb 16 2025
R-4.5-winNOTEFeb 16 2025
R-4.5-macERRORFeb 16 2025
R-4.5-linuxNOTEFeb 16 2025
R-4.4-winNOTEFeb 16 2025
R-4.4-macERRORFeb 16 2025
R-4.3-winOKFeb 16 2025
R-4.3-macERRORFeb 16 2025

Exports:CHRONOSrunconvertMiRNANomenclatureconvertNomenclaturecreatePathwayGraphsdownloadKEGGPathwayListdownloadMiRecordsdownloadPathwaysextractLinearSubpathwaysextractNonLinearSubpathwaysgetEdgeTypesimportExpressionspathwayMeasuresscoreSubpathwayssubpathwayKEGGmapsubpathwayMiRNAsvisualizeResults

Dependencies:AnnotationDbiaskpassBHBiobaseBiocFileCacheBiocGenericsbiomaRtBiostringsbitbit64bitopsblobcachemcirclizeclicodetoolscolorspacecpp11crayoncurlDBIdbplyrdigestdoParalleldplyrfansifastmapfilelockforeachgenericsGenomeInfoDbGenomeInfoDbDataGlobalOptionsgluegraphhmshttrhttr2igraphIRangesiteratorsjsonliteKEGGRESTlatticelifecyclemagrittrMatrixmemoisemimeopensslopenxlsxpillarpkgconfigplogrpngprettyunitsprogresspurrrR6rappdirsRBGLRcppRCurlrJavarlangRSQLiteS4VectorsshapestringistringrsystibbletidyrtidyselectUCSC.utilsutf8vctrswithrXMLxml2XVectorzip

CHRONOS: A time-varying method for microRNA-mediated sub-pathway enrichment analysis

Aristidis G. Vrahatis, Konstantina Dimitrakopoulou, Panos Balomenos

Rendered fromCHRONOS.Rmdusingknitr::rmarkdownon Feb 16 2025.

Last update: 2017-04-05
Started: 2016-04-18