Package: CGHnormaliter 1.59.0
Bart P.P. van Houte
CGHnormaliter: Normalization of array CGH data with imbalanced aberrations.
Normalization and centralization of array comparative genomic hybridization (aCGH) data. The algorithm uses an iterative procedure that effectively eliminates the influence of imbalanced copy numbers. This leads to a more reliable assessment of copy number alterations (CNAs).
Authors:
CGHnormaliter_1.59.0.tar.gz
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CGHnormaliter.pdf |CGHnormaliter.html✨
CGHnormaliter/json (API)
| # Install 'CGHnormaliter' in R: |
| install.packages('CGHnormaliter', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
- Leukemia - Array CGH experiment data on childhood acute lymphoblastic leukemia (ALL) in humans
On BioConductor:CGHnormaliter-1.59.0(bioc 3.20)CGHnormaliter-1.58.0(bioc 3.19)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 2 months agofrom:2497eb719d
Exports:CGHnormaliterCGHnormaliter.write.table
Dependencies:BiobaseBiocGenericsCGHbaseCGHcallDNAcopyimputelimmamarraysnowsnowfallstatmod
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| This package implements the CGHnormaliter algorithm which is a strategy for improved normalization of array Comparative Genomic Hybridization (aCGH) data | CGHnormaliter-package |
| Iterative normalization of aCGH data | CGHnormaliter |
| Print normalized aCGH data to a file | CGHnormaliter.write.table |
| Array CGH experiment data on childhood acute lymphoblastic leukemia (ALL) in humans | Leukemia |