Package: CGHnormaliter 1.61.0

Bart P.P. van Houte

CGHnormaliter: Normalization of array CGH data with imbalanced aberrations.

Normalization and centralization of array comparative genomic hybridization (aCGH) data. The algorithm uses an iterative procedure that effectively eliminates the influence of imbalanced copy numbers. This leads to a more reliable assessment of copy number alterations (CNAs).

Authors:Bart P.P. van Houte, Thomas W. Binsl, Hannes Hettling

CGHnormaliter_1.61.0.tar.gz
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CGHnormaliter.pdf |CGHnormaliter.html✨
CGHnormaliter/json (API)

# Install 'CGHnormaliter' in R:
install.packages('CGHnormaliter', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Datasets:
  • Leukemia - Array CGH experiment data on childhood acute lymphoblastic leukemia (ALL) in humans

On BioConductor:CGHnormaliter-1.61.0(bioc 3.21)CGHnormaliter-1.60.0(bioc 3.20)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

microarraypreprocessing

4.15 score 1 scripts 278 downloads 7 mentions 2 exports 12 dependencies

Last updated 2 months agofrom:bb90e820ca. Checks:OK: 1 NOTE: 6. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 29 2024
R-4.5-winNOTENov 29 2024
R-4.5-linuxNOTENov 29 2024
R-4.4-winNOTENov 29 2024
R-4.4-macNOTENov 29 2024
R-4.3-winNOTENov 29 2024
R-4.3-macNOTENov 29 2024

Exports:CGHnormaliterCGHnormaliter.write.table

Dependencies:BiobaseBiocGenericsCGHbaseCGHcallDNAcopygenericsimputelimmamarraysnowsnowfallstatmod

CGHnormaliter

Rendered fromCGHnormaliter.Rnwusingutils::Sweaveon Nov 29 2024.

Last update: 2013-11-01
Started: 2013-11-01