Package: CGHnormaliter 1.67.0

Bart P.P. van Houte

CGHnormaliter: Normalization of array CGH data with imbalanced aberrations.

Normalization and centralization of array comparative genomic hybridization (aCGH) data. The algorithm uses an iterative procedure that effectively eliminates the influence of imbalanced copy numbers. This leads to a more reliable assessment of copy number alterations (CNAs).

Authors:Bart P.P. van Houte, Thomas W. Binsl, Hannes Hettling

CGHnormaliter_1.67.0.tar.gz
CGHnormaliter_1.67.0.zip(r-4.7)CGHnormaliter_1.67.0.zip(r-4.6)CGHnormaliter_1.67.0.zip(r-4.5)
CGHnormaliter_1.67.0.tgz(r-4.6-any)CGHnormaliter_1.67.0.tgz(r-4.5-any)
CGHnormaliter_1.67.0.tar.gz(r-4.7-any)CGHnormaliter_1.67.0.tar.gz(r-4.6-any)
CGHnormaliter_1.67.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
CGHnormaliter/json (API)

# Install 'CGHnormaliter' in R:

install.packages('CGHnormaliter', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Datasets:

Leukemia - Array CGH experiment data on childhood acute lymphoblastic leukemia (ALL) in humans

On BioConductor:CGHnormaliter-1.67.0(bioc 3.24)CGHnormaliter-1.66.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

microarray preprocessing

4.15 score 1 scripts 7 mentions 2 exports 12 dependencies

Last updated from:d55ab73df0. Checks:1 ERROR, 7 NOTE, 2 OK. Indexed: yes.

Target	Result	Time
bioc-checks	ERROR	135
linux-devel-x86_64	NOTE	218
source / vignettes	OK	191
linux-release-x86_64	NOTE	219
macos-release-arm64	NOTE	111
macos-oldrel-arm64	NOTE	126
windows-devel	NOTE	109
windows-release	NOTE	112
windows-oldrel	NOTE	114
wasm-release	OK	95

Exports:CGHnormaliter CGHnormaliter.write.table

Dependencies:Biobase BiocGenerics CGHbase CGHcall DNAcopy generics impute limma marray snow snowfall statmod

CGHnormaliter

Rendered fromCGHnormaliter.Rnwusingutils::Sweave

Last update: 2013-11-01
Started: 2013-11-01

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
This package implements the CGHnormaliter algorithm which is a strategy for improved normalization of array Comparative Genomic Hybridization (aCGH) data	CGHnormaliter-package
Iterative normalization of aCGH data	CGHnormaliter
Print normalized aCGH data to a file	CGHnormaliter.write.table
Array CGH experiment data on childhood acute lymphoblastic leukemia (ALL) in humans	Leukemia