Package: CGHnormaliter 1.61.0

Bart P.P. van Houte

CGHnormaliter: Normalization of array CGH data with imbalanced aberrations.

Normalization and centralization of array comparative genomic hybridization (aCGH) data. The algorithm uses an iterative procedure that effectively eliminates the influence of imbalanced copy numbers. This leads to a more reliable assessment of copy number alterations (CNAs).

Authors:Bart P.P. van Houte, Thomas W. Binsl, Hannes Hettling

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CGHnormaliter.pdf |CGHnormaliter.html✨
CGHnormaliter/json (API)

# Install 'CGHnormaliter' in R:

install.packages('CGHnormaliter', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Datasets:

Leukemia - Array CGH experiment data on childhood acute lymphoblastic leukemia (ALL) in humans

On BioConductor:CGHnormaliter-1.61.0(bioc 3.21)CGHnormaliter-1.60.0(bioc 3.20)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

microarray preprocessing

4.15 score 1 scripts 334 downloads 7 mentions 2 exports 12 dependencies

Last updated 5 months agofrom:bb90e820ca. Checks:1 OK, 8 NOTE. Indexed: yes.

Target	Result	Latest binary
Doc / Vignettes	OK	Mar 29 2025
R-4.5-win	NOTE	Mar 29 2025
R-4.5-mac	NOTE	Mar 29 2025
R-4.5-linux	NOTE	Mar 29 2025
R-4.4-win	NOTE	Mar 29 2025
R-4.4-mac	NOTE	Mar 29 2025
R-4.4-linux	NOTE	Mar 29 2025
R-4.3-win	NOTE	Mar 29 2025
R-4.3-mac	NOTE	Mar 29 2025

Exports:CGHnormaliter CGHnormaliter.write.table

Dependencies:Biobase BiocGenerics CGHbase CGHcall DNAcopy generics impute limma marray snow snowfall statmod

CGHnormaliter

Rendered fromCGHnormaliter.Rnwusingutils::Sweaveon Mar 29 2025.

Last update: 2013-11-01
Started: 2013-11-01

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
This package implements the CGHnormaliter algorithm which is a strategy for improved normalization of array Comparative Genomic Hybridization (aCGH) data	CGHnormaliter-package
Iterative normalization of aCGH data	CGHnormaliter
Print normalized aCGH data to a file	CGHnormaliter.write.table
Array CGH experiment data on childhood acute lymphoblastic leukemia (ALL) in humans	Leukemia