Package: CGHnormaliter 1.67.0

Bart P.P. van Houte

CGHnormaliter: Normalization of array CGH data with imbalanced aberrations.

Normalization and centralization of array comparative genomic hybridization (aCGH) data. The algorithm uses an iterative procedure that effectively eliminates the influence of imbalanced copy numbers. This leads to a more reliable assessment of copy number alterations (CNAs).

Authors:Bart P.P. van Houte, Thomas W. Binsl, Hannes Hettling

CGHnormaliter_1.67.0.tar.gz
CGHnormaliter_1.67.0.zip(r-4.7)CGHnormaliter_1.67.0.zip(r-4.6)CGHnormaliter_1.67.0.zip(r-4.5)
CGHnormaliter_1.67.0.tgz(r-4.6-any)CGHnormaliter_1.67.0.tgz(r-4.5-any)
CGHnormaliter_1.67.0.tar.gz(r-4.7-any)CGHnormaliter_1.67.0.tar.gz(r-4.6-any)
CGHnormaliter_1.67.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
CGHnormaliter/json (API)

# Install 'CGHnormaliter' in R:
install.packages('CGHnormaliter', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))
Datasets:
  • Leukemia - Array CGH experiment data on childhood acute lymphoblastic leukemia (ALL) in humans

On BioConductor:CGHnormaliter-1.67.0(bioc 3.24)CGHnormaliter-1.66.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

microarraypreprocessing

4.15 score 6 scripts 440 downloads 7 mentions 2 exports 12 dependencies

Last updated from:d55ab73df0. Checks:1 ERROR, 7 NOTE, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksERROR132
linux-devel-x86_64NOTE201
source / vignettesOK237
linux-release-x86_64NOTE168
macos-release-arm64NOTE111
macos-oldrel-arm64NOTE117
windows-develNOTE176
windows-releaseNOTE160
windows-oldrelNOTE130
wasm-releaseOK90

Exports:CGHnormaliterCGHnormaliter.write.table

Dependencies:BiobaseBiocGenericsCGHbaseCGHcallDNAcopygenericsimputelimmamarraysnowsnowfallstatmod

CGHnormaliter

Rendered fromCGHnormaliter.Rnwusingutils::Sweaveon May 29 2026.

Last update: 2013-11-01
Started: 2013-11-01