Package: CGHcall 2.67.0
Mark van de Wiel
CGHcall: Calling aberrations for array CGH tumor profiles.
Calls aberrations for array CGH data using a six state mixture model as well as several biological concepts that are ignored by existing algorithms. Visualization of profiles is also provided.
Authors:
CGHcall_2.67.0.tar.gz
CGHcall_2.67.0.zip(r-4.5)CGHcall_2.67.0.zip(r-4.4)CGHcall_2.67.0.zip(r-4.3)
CGHcall_2.67.0.tgz(r-4.4-any)CGHcall_2.67.0.tgz(r-4.3-any)
CGHcall_2.67.0.tar.gz(r-4.5-noble)CGHcall_2.67.0.tar.gz(r-4.4-noble)
CGHcall_2.67.0.tgz(r-4.4-emscripten)CGHcall_2.67.0.tgz(r-4.3-emscripten)
CGHcall.pdf |CGHcall.html✨
CGHcall/json (API)
| # Install 'CGHcall' in R: |
| install.packages('CGHcall', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
- Wilting - Cervical cancer arrayCGH data
On BioConductor:CGHcall-2.67.0(bioc 3.20)CGHcall-2.66.0(bioc 3.19)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 2 months agofrom:0d5df8ad35
Exports:CGHcallExpandCGHcallnormalizepostsegnormalizepreprocesssegmentData
Dependencies:BiobaseBiocGenericsCGHbaseDNAcopyimputelimmamarraysnowsnowfallstatmod
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Calling aberrations for array CGH tumor profiles. | CGHcall-package |
| Calling aberrations for array CGH tumor profiles. | CGHcall |
| Expands result fron CGHcall to CGHcall object. | ExpandCGHcall |
| Normalization and cellularity adjustment for arrayCGH data. | normalize |
| Post-segmentation normalization | postsegnormalize |
| Preprocess arrayCGH data | preprocess |
| Breakpoint detection for arrayCGH data. | segmentData |
| Cervical cancer arrayCGH data | Wilting |
