Package: CGHcall 2.75.0

Mark van de Wiel

CGHcall: Calling aberrations for array CGH tumor profiles.

Calls aberrations for array CGH data using a six state mixture model as well as several biological concepts that are ignored by existing algorithms. Visualization of profiles is also provided.

Authors:Mark van de Wiel, Sjoerd Vosse

CGHcall_2.75.0.tar.gz
CGHcall_2.75.0.zip(r-4.7)CGHcall_2.75.0.zip(r-4.6)CGHcall_2.75.0.zip(r-4.5)
CGHcall_2.75.0.tgz(r-4.6-any)CGHcall_2.75.0.tgz(r-4.5-any)
CGHcall_2.75.0.tar.gz(r-4.7-any)CGHcall_2.75.0.tar.gz(r-4.6-any)
CGHcall_2.75.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
CGHcall/json (API)

# Install 'CGHcall' in R:
install.packages('CGHcall', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))
Datasets:
  • Wilting - Cervical cancer arrayCGH data

On BioConductor:CGHcall-2.75.0(bioc 3.24)CGHcall-2.74.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

microarraypreprocessingvisualization

6.29 score 6 packages 54 scripts 824 downloads 37 mentions 6 exports 11 dependencies

Last updated from:86df0183f8. Checks:1 ERROR, 7 WARNING, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksERROR130
linux-devel-x86_64WARNING168
source / vignettesOK159
linux-release-x86_64WARNING158
macos-release-arm64WARNING120
macos-oldrel-arm64WARNING123
windows-develWARNING104
windows-releaseWARNING71
windows-oldrelWARNING76
wasm-releaseOK97

Exports:CGHcallExpandCGHcallnormalizepostsegnormalizepreprocesssegmentData

Dependencies:BiobaseBiocGenericsCGHbaseDNAcopygenericsimputelimmamarraysnowsnowfallstatmod

CGHcall

Rendered fromCGHcall.Rnwusingutils::Sweaveon Jun 11 2026.

Last update: 2013-11-01
Started: 2013-11-01