Package: CGHcall 2.69.0

Mark van de Wiel

CGHcall: Calling aberrations for array CGH tumor profiles.

Calls aberrations for array CGH data using a six state mixture model as well as several biological concepts that are ignored by existing algorithms. Visualization of profiles is also provided.

Authors:Mark van de Wiel, Sjoerd Vosse

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CGHcall.pdf |CGHcall.html✨
CGHcall/json (API)

# Install 'CGHcall' in R:
install.packages('CGHcall', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Datasets:
  • Wilting - Cervical cancer arrayCGH data

On BioConductor:CGHcall-2.69.0(bioc 3.21)CGHcall-2.68.0(bioc 3.20)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

microarraypreprocessingvisualization

6.18 score 6 packages 42 scripts 697 downloads 37 mentions 6 exports 11 dependencies

Last updated 3 months agofrom:3089e44749. Checks:1 OK, 6 WARNING. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKJan 21 2025
R-4.5-winWARNINGJan 21 2025
R-4.5-linuxWARNINGJan 21 2025
R-4.4-winWARNINGJan 21 2025
R-4.4-macWARNINGJan 21 2025
R-4.3-winWARNINGJan 21 2025
R-4.3-macWARNINGJan 21 2025

Exports:CGHcallExpandCGHcallnormalizepostsegnormalizepreprocesssegmentData

Dependencies:BiobaseBiocGenericsCGHbaseDNAcopygenericsimputelimmamarraysnowsnowfallstatmod

CGHcall

Rendered fromCGHcall.Rnwusingutils::Sweaveon Jan 21 2025.

Last update: 2013-11-01
Started: 2013-11-01