Package: CGEN 3.43.0

Justin Lee

CGEN: An R package for analysis of case-control studies in genetic epidemiology

This is a package for analysis of case-control data in genetic epidemiology. It provides a set of statistical methods for evaluating gene-environment (or gene-genes) interactions under multiplicative and additive risk models, with or without assuming gene-environment (or gene-gene) independence in the underlying population.

Authors:Samsiddhi Bhattacharjee [aut], Nilanjan Chatterjee [aut], Summer Han [aut], Minsun Song [aut], William Wheeler [aut], Matthieu de Rochemonteix [aut], Nilotpal Sanyal [aut], Justin Lee [cre]

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CGEN.pdf |CGEN.html✨
CGEN/json (API)
NEWS

# Install 'CGEN' in R:
install.packages('CGEN', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))
Datasets:

On BioConductor:CGEN-3.43.0(bioc 3.21)CGEN-3.42.0(bioc 3.20)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

snpmultiplecomparisonclusteringfortran

3.90 score 10 scripts 253 downloads 2 mentions 15 exports 4 dependencies

Last updated 4 months agofrom:a8ad56a538. Checks:1 OK, 9 WARNING, 1 NOTE. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKFeb 25 2025
R-4.5-win-x86_64WARNINGFeb 25 2025
R-4.5-mac-x86_64WARNINGFeb 25 2025
R-4.5-mac-aarch64WARNINGFeb 25 2025
R-4.5-linux-x86_64WARNINGFeb 25 2025
R-4.4-win-x86_64WARNINGFeb 25 2025
R-4.4-mac-x86_64WARNINGFeb 25 2025
R-4.4-mac-aarch64WARNINGFeb 25 2025
R-4.3-win-x86_64NOTEFeb 25 2025
R-4.3-mac-x86_64WARNINGFeb 25 2025
R-4.3-mac-aarch64WARNINGFeb 25 2025

Exports:additive.testgetMatchedSetsgetSummarygetWaldTestGxE.scanGxE.scan.combineGxE.scan.partitionManhattan.plotprintEffectsQQ.plotsnp.effectssnp.effects.plotsnp.logisticsnp.matchedsnp.score

Dependencies:latticeMatrixmvtnormsurvival

CGEN Scan Vignette

Rendered fromvignette_GxE.Rnwusingutils::Sweaveon Feb 25 2025.

Last update: 2019-02-25
Started: 2014-09-23

CGEN Vignette

Rendered fromvignette.Rnwusingutils::Sweaveon Feb 25 2025.

Last update: 2015-10-30
Started: 2013-11-01