Package: CGEN 3.49.0

Justin Lee

CGEN: An R package for analysis of case-control studies in genetic epidemiology

This is a package for analysis of case-control data in genetic epidemiology. It provides a set of statistical methods for evaluating gene-environment (or gene-genes) interactions under multiplicative and additive risk models, with or without assuming gene-environment (or gene-gene) independence in the underlying population.

Authors:Samsiddhi Bhattacharjee [aut], Nilanjan Chatterjee [aut], Summer Han [aut], Minsun Song [aut], William Wheeler [aut], Matthieu de Rochemonteix [aut], Nilotpal Sanyal [aut], Justin Lee [cre]

CGEN_3.49.0.tar.gz
CGEN_3.49.0.zip(r-4.7)CGEN_3.49.0.zip(r-4.6)CGEN_3.49.0.zip(r-4.5)
CGEN_3.49.0.tgz(r-4.6-x86_64)CGEN_3.49.0.tgz(r-4.6-arm64)CGEN_3.49.0.tgz(r-4.5-x86_64)
CGEN_3.49.0.tar.gz(r-4.7-arm64)CGEN_3.49.0.tar.gz(r-4.7-x86_64)CGEN_3.49.0.tar.gz(r-4.6-arm64)CGEN_3.49.0.tar.gz(r-4.6-x86_64)
CGEN_3.49.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
CGEN/json (API)
NEWS

# Install 'CGEN' in R:
install.packages('CGEN', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))
Datasets:

On BioConductor:CGEN-3.49.0(bioc 3.24)CGEN-3.48.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

snpmultiplecomparisonclustering

3.90 score 10 scripts 375 downloads 2 mentions 15 exports 4 dependencies

Last updated from:123525ac5c. Checks:11 WARNING, 2 OK, 1 FAIL. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksWARNING133
linux-devel-arm64WARNING202
linux-devel-x86_64WARNING221
source / vignettesOK185
linux-release-arm64WARNING200
linux-release-x86_64WARNING250
macos-release-arm64WARNING176
macos-release-x86_64WARNING667
macos-oldrel-arm64FAIL71
macos-oldrel-x86_64WARNING413
windows-develWARNING185
windows-releaseWARNING221
windows-oldrelWARNING188
wasm-releaseOK92

Exports:additive.testgetMatchedSetsgetSummarygetWaldTestGxE.scanGxE.scan.combineGxE.scan.partitionManhattan.plotprintEffectsQQ.plotsnp.effectssnp.effects.plotsnp.logisticsnp.matchedsnp.score

Dependencies:latticeMatrixmvtnormsurvival

CGEN Scan Vignette

Rendered fromvignette_GxE.Rnwusingutils::Sweaveon May 29 2026.

Last update: 2019-02-25
Started: 2014-09-23

CGEN Vignette

Rendered fromvignette.Rnwusingutils::Sweaveon May 29 2026.

Last update: 2015-10-30
Started: 2013-11-01