Package: CCPlotR 1.5.0

Sarah Ennis

CCPlotR: Plots For Visualising Cell-Cell Interactions

CCPlotR is an R package for visualising results from tools that predict cell-cell interactions from single-cell RNA-seq data. These plots are generic and can be used to visualise results from multiple tools such as Liana, CellPhoneDB, NATMI etc.

Authors:Sarah Ennis [aut, cre], Pilib Ó Broin [aut], Eva Szegezdi [aut]

CCPlotR_1.5.0.tar.gz
CCPlotR_1.5.0.zip(r-4.5)CCPlotR_1.5.0.zip(r-4.4)CCPlotR_1.5.0.zip(r-4.3)
CCPlotR_1.5.0.tgz(r-4.4-any)CCPlotR_1.5.0.tgz(r-4.3-any)
CCPlotR_1.5.0.tar.gz(r-4.5-noble)CCPlotR_1.5.0.tar.gz(r-4.4-noble)
CCPlotR_1.5.0.tgz(r-4.4-emscripten)CCPlotR_1.5.0.tgz(r-4.3-emscripten)
CCPlotR.pdf |CCPlotR.html✨
CCPlotR/json (API)
NEWS

# Install 'CCPlotR' in R:

install.packages('CCPlotR', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/sarah145/ccplotr/issues

Datasets:

toy_data - Toy data for CCPlotR
toy_exp - Toy expression data for CCPlotR

On BioConductor:CCPlotR-1.3.1(bioc 3.20)CCPlotR-1.2.0(bioc 3.19)

singlecell network visualization cellbiology systemsbiology

5.77 score 39 stars 7 scripts 140 downloads 7 exports 89 dependencies

Last updated 23 days agofrom:c2f2f50692. Checks:OK: 2 NOTE: 3 WARNING: 2. Indexed: yes.

Target	Result	Date
Doc / Vignettes	OK	Oct 30 2024
R-4.5-win	NOTE	Oct 30 2024
R-4.5-linux	NOTE	Oct 30 2024
R-4.4-win	NOTE	Oct 30 2024
R-4.4-mac	WARNING	Oct 30 2024
R-4.3-win	OK	Oct 30 2024
R-4.3-mac	WARNING	Oct 30 2024

Exports:cc_arrow cc_circos cc_dotplot cc_heatmap cc_network cc_sigmoid paletteMartin

Dependencies:BiocGenerics cachem circlize cli clue cluster codetools colorspace commonmark ComplexHeatmap cpp11 crayon curl digest doParallel dplyr fansi farver fastmap forcats foreach fs generics GetoptLong ggbump ggforce ggfun ggh4x ggplot2 ggraph ggrepel ggtext GlobalOptions glue graphlayouts gridExtra gridtext gtable igraph IRanges isoband iterators jpeg labeling lattice lifecycle magrittr markdown MASS Matrix matrixStats memoise mgcv munsell nlme patchwork pillar pkgconfig plyr png polyclip purrr R6 RColorBrewer Rcpp RcppArmadillo RcppEigen rjson rlang S4Vectors scales scatterpie shape stringi stringr systemfonts tibble tidygraph tidyr tidyselect tweenr utf8 vctrs viridis viridisLite withr xfun xml2 yulab.utils

Generating visualisations of cell-cell interactions with CCPlotR

Sarah Ennis, Pilib Ó Broin, Eva Szegezdi

Rendered fromCCPlotR_visualisations.Rmdusingknitr::rmarkdownon Oct 30 2024.

Last update: 2023-10-06
Started: 2023-10-06

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Paired Arrow Plot Function	cc_arrow
Circos Plot Function	cc_circos
Dotplot Function	cc_dotplot
Heatmap Function	cc_heatmap
Network Plot Function	cc_network
Sigmoid Plot Function	cc_sigmoid
Discrete palette generator	paletteMartin
Toy data for CCPlotR	toy_data
Toy expression data for CCPlotR	toy_exp