Package: CCPlotR 1.5.0

Sarah Ennis

CCPlotR: Plots For Visualising Cell-Cell Interactions

CCPlotR is an R package for visualising results from tools that predict cell-cell interactions from single-cell RNA-seq data. These plots are generic and can be used to visualise results from multiple tools such as Liana, CellPhoneDB, NATMI etc.

Authors:Sarah Ennis [aut, cre], Pilib Ó Broin [aut], Eva Szegezdi [aut]

CCPlotR_1.5.0.tar.gz
CCPlotR_1.5.0.zip(r-4.5)CCPlotR_1.5.0.zip(r-4.4)CCPlotR_1.5.0.zip(r-4.3)
CCPlotR_1.5.0.tgz(r-4.4-any)CCPlotR_1.5.0.tgz(r-4.3-any)
CCPlotR_1.5.0.tar.gz(r-4.5-noble)CCPlotR_1.5.0.tar.gz(r-4.4-noble)
CCPlotR_1.5.0.tgz(r-4.4-emscripten)CCPlotR_1.5.0.tgz(r-4.3-emscripten)
CCPlotR.pdf |CCPlotR.html✨
CCPlotR/json (API)
NEWS

# Install 'CCPlotR' in R:
install.packages('CCPlotR', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/sarah145/ccplotr/issues

Datasets:

On BioConductor:CCPlotR-1.5.0(bioc 3.21)CCPlotR-1.4.0(bioc 3.20)

singlecellnetworkvisualizationcellbiologysystemsbiology

5.79 score 41 stars 7 scripts 140 downloads 7 exports 89 dependencies

Last updated 2 months agofrom:c2f2f50692. Checks:OK: 2 NOTE: 3 WARNING: 2. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 29 2024
R-4.5-winNOTENov 29 2024
R-4.5-linuxNOTENov 29 2024
R-4.4-winNOTENov 29 2024
R-4.4-macWARNINGNov 29 2024
R-4.3-winOKNov 29 2024
R-4.3-macWARNINGNov 29 2024

Exports:cc_arrowcc_circoscc_dotplotcc_heatmapcc_networkcc_sigmoidpaletteMartin

Dependencies:BiocGenericscachemcirclizecliclueclustercodetoolscolorspacecommonmarkComplexHeatmapcpp11crayoncurldigestdoParalleldplyrfansifarverfastmapforcatsforeachfsgenericsGetoptLongggbumpggforceggfunggh4xggplot2ggraphggrepelggtextGlobalOptionsgluegraphlayoutsgridExtragridtextgtableigraphIRangesisobanditeratorsjpeglabelinglatticelifecyclemagrittrmarkdownMASSMatrixmatrixStatsmemoisemgcvmunsellnlmepatchworkpillarpkgconfigplyrpngpolyclippurrrR6RColorBrewerRcppRcppArmadilloRcppEigenrjsonrlangS4Vectorsscalesscatterpieshapestringistringrsystemfontstibbletidygraphtidyrtidyselecttweenrutf8vctrsviridisviridisLitewithrxfunxml2yulab.utils

Generating visualisations of cell-cell interactions with CCPlotR

Sarah Ennis, Pilib Ó Broin, Eva Szegezdi

Rendered fromCCPlotR_visualisations.Rmdusingknitr::rmarkdownon Nov 29 2024.

Last update: 2023-10-06
Started: 2023-10-06