Package: CCPlotR 1.3.0
Sarah Ennis
CCPlotR: Plots For Visualising Cell-Cell Interactions
CCPlotR is an R package for visualising results from tools that predict cell-cell interactions from single-cell RNA-seq data. These plots are generic and can be used to visualise results from multiple tools such as Liana, CellPhoneDB, NATMI etc.
Authors:
CCPlotR_1.3.0.tar.gz
CCPlotR_1.3.0.zip(r-4.5)CCPlotR_1.3.0.zip(r-4.4)CCPlotR_1.3.0.zip(r-4.3)
CCPlotR_1.3.0.tgz(r-4.4-any)CCPlotR_1.3.0.tgz(r-4.3-any)
CCPlotR_1.3.0.tar.gz(r-4.5-noble)CCPlotR_1.3.0.tar.gz(r-4.4-noble)
CCPlotR_1.3.0.tgz(r-4.4-emscripten)CCPlotR_1.3.0.tgz(r-4.3-emscripten)
CCPlotR.pdf |CCPlotR.html✨
CCPlotR/json (API)
NEWS
# Install 'CCPlotR' in R: |
install.packages('CCPlotR', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/sarah145/ccplotr/issues
On BioConductor:CCPlotR-1.3.0(bioc 3.20)CCPlotR-1.2.0(bioc 3.19)
Last updated 2 months agofrom:626b49b79b
Exports:cc_arrowcc_circoscc_dotplotcc_heatmapcc_networkcc_sigmoidpaletteMartin
Dependencies:BiocGenericscachemcirclizecliclueclustercodetoolscolorspacecommonmarkComplexHeatmapcpp11crayoncurldigestdoParalleldplyrfansifarverfastmapforcatsforeachgenericsGetoptLongggbumpggforceggfunggh4xggplot2ggraphggrepelggtextGlobalOptionsgluegraphlayoutsgridExtragridtextgtableigraphIRangesisobanditeratorsjpeglabelinglatticelifecyclemagrittrmarkdownMASSMatrixmatrixStatsmemoisemgcvmunsellnlmepatchworkpillarpkgconfigplyrpngpolyclippurrrR6RColorBrewerRcppRcppArmadilloRcppEigenrjsonrlangS4Vectorsscalesscatterpieshapestringistringrsystemfontstibbletidygraphtidyrtidyselecttweenrutf8vctrsviridisviridisLitewithrxfunxml2
Readme and manuals
Help Manual
Help page | Topics |
---|---|
Paired Arrow Plot Function | cc_arrow |
Circos Plot Function | cc_circos |
Dotplot Function | cc_dotplot |
Heatmap Function | cc_heatmap |
Network Plot Function | cc_network |
Sigmoid Plot Function | cc_sigmoid |
Discrete palette generator | paletteMartin |
Toy data for CCPlotR | toy_data |
Toy expression data for CCPlotR | toy_exp |