Package: CAFE 1.49.0

Sander Bollen

CAFE: Chromosmal Aberrations Finder in Expression data

Detection and visualizations of gross chromosomal aberrations using Affymetrix expression microarrays as input

Authors:Sander Bollen

CAFE_1.49.0.tar.gz
CAFE_1.49.0.zip(r-4.7)CAFE_1.49.0.zip(r-4.6)CAFE_1.49.0.zip(r-4.5)
CAFE_1.49.0.tgz(r-4.6-any)CAFE_1.49.0.tgz(r-4.5-any)
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CAFE_1.49.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
CAFE/json (API)

# Install 'CAFE' in R:
install.packages('CAFE', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))
Datasets:

On BioConductor:CAFE-1.49.0(bioc 3.24)CAFE-1.48.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

geneexpressionmicroarrayonechannelgenesetenrichment

3.30 score 3 scripts 251 mentions 13 exports 132 dependencies

Last updated from:01db6cd436. Checks:2 ERROR, 7 WARNING, 1 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksERROR224
linux-devel-x86_64WARNING406
source / vignettesERROR3290
linux-release-x86_64WARNING476
macos-release-arm64WARNING491
macos-oldrel-arm64WARNING284
windows-develWARNING350
windows-releaseWARNING354
windows-oldrelWARNING384
wasm-releaseOK372

Exports:armStatsbandStatschromosomeStatscliSubsetdiscontPlotdiscontSmoothfacetPlotfisher.methodguiSubsetProcessCelsrawPlotslidPlotslidSmooth

Dependencies:abindaffyaffyioannotateAnnotationDbiAnnotationFilteraskpassbackportsbase64encBHBiobaseBiocBaseUtilsBiocGenericsBiocIOBiocManagerBiocParallelBiostringsbiovizBasebitbit64bitopsblobBSgenomebslibcachemcheckmatecigarillocliclustercodetoolscolorspacecpp11crayoncurldata.tableDBIDelayedArraydichromatdigestensembldbevaluatefarverfastmapfontawesomeforeignformatRFormulafsfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomicAlignmentsGenomicFeaturesGenomicRangesggbioggplot2gluegraphgridExtragtablehighrHmischtmlTablehtmltoolshtmlwidgetshttrIRangesisobandjquerylibjsonliteKEGGRESTknitrlabelinglambda.rlatticelazyevallifecyclemagrittrMatrixMatrixGenericsmatrixStatsmemoisemimennetopensslOrganismDbipkgconfigplyrpngpreprocessCoreProtGenericsR6rappdirsRBGLRColorBrewerRcppRCurlreshape2restfulrRhtslibrjsonrlangrmarkdownrpartRsamtoolsRSQLiterstudioapirtracklayerS4ArraysS4VectorsS7sassscalesSeqinfosnowSparseArraystringistringrSummarizedExperimentsystinytexUCSC.utilsVariantAnnotationvctrsviridisLitewithrxfunXMLxtableXVectoryaml