Package: BubbleTree 2.35.0

Todd Creasy

BubbleTree: BubbleTree: an intuitive visualization to elucidate tumoral aneuploidy and clonality in somatic mosaicism using next generation sequencing data

CNV analysis in groups of tumor samples.

Authors:Wei Zhu <[email protected]>, Michael Kuziora <[email protected]>, Todd Creasy <[email protected]>, Brandon Higgs <[email protected]>

BubbleTree_2.35.0.tar.gz
BubbleTree_2.35.0.zip(r-4.5)BubbleTree_2.35.0.zip(r-4.4)BubbleTree_2.35.0.zip(r-4.3)
BubbleTree_2.35.0.tgz(r-4.4-any)BubbleTree_2.35.0.tgz(r-4.3-any)
BubbleTree_2.35.0.tar.gz(r-4.5-noble)BubbleTree_2.35.0.tar.gz(r-4.4-noble)
BubbleTree_2.35.0.tgz(r-4.4-emscripten)BubbleTree_2.35.0.tgz(r-4.3-emscripten)
BubbleTree.pdf |BubbleTree.html✨
BubbleTree/json (API)
NEWS

Peer review:

On BioConductor:BubbleTree-2.35.0(bioc 3.20)BubbleTree-2.34.0(bioc 3.19)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

bioconductor-package

21 exports 0.82 score 141 dependencies 3 mentions

Last updated 2 months agofrom:80c07795ca

Exports:annoByGenesAndCytoAnnotatebafTrackbtcomparebtpredictBTreePlotterBTreePredictordrawBTreedrawBubblesdrawFeaturesgetTracksheteroLociTrackinfoloadRBDmakeRBDRBDRscoreTracksaveXLStrackBTreeTrackPlotterxyTrack

Dependencies:abindAnnotationDbiAnnotationFilteraskpassbackportsbase64encBHBiobaseBiocGenericsBiocIOBiocManagerBiocParallelBiocStyleBiostringsbiovizBasebitbit64bitopsblobbookdownBSgenomebslibcachemcheckmateclasscliclustercodetoolscolorspacecpp11crayoncurldata.tableDBIDelayedArraydichromatdigestdplyre1071ensembldbevaluatefansifarverfastmapfontawesomeforeignformatRFormulafsfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomeInfoDbDataGenomicAlignmentsGenomicFeaturesGenomicRangesggplot2gluegridExtragtablegtoolshighrHmischtmlTablehtmltoolshtmlwidgetshttrIRangesisobandjquerylibjsonliteKEGGRESTknitrlabelinglambda.rlatticelazyevallifecyclelimmamagrittrMASSMatrixMatrixGenericsmatrixStatsmemoisemgcvmimemunsellnlmennetopensslpillarpkgconfigplogrplyrpngProtGenericsproxyR6rappdirsRColorBrewerRcppRCurlrestfulrRhtslibrjsonrlangrmarkdownrpartRsamtoolsRSQLiterstudioapirtracklayerS4ArraysS4VectorssassscalessnowSparseArraystatmodstringistringrSummarizedExperimentsystibbletidyselecttinytexUCSC.utilsutf8VariantAnnotationvctrsviridisviridisLitewithrWriteXLSxfunXMLXVectoryamlzlibbioc