Package: BiocSingular 1.21.2
Aaron Lun
BiocSingular: Singular Value Decomposition for Bioconductor Packages
Implements exact and approximate methods for singular value decomposition and principal components analysis, in a framework that allows them to be easily switched within Bioconductor packages or workflows. Where possible, parallelization is achieved using the BiocParallel framework.
Authors:
BiocSingular_1.21.2.tar.gz
BiocSingular_1.21.2.zip(r-4.5)BiocSingular_1.21.2.zip(r-4.4)BiocSingular_1.21.2.zip(r-4.3)
BiocSingular_1.21.2.tgz(r-4.4-arm64)BiocSingular_1.21.2.tgz(r-4.4-x86_64)BiocSingular_1.21.2.tgz(r-4.3-arm64)BiocSingular_1.21.2.tgz(r-4.3-x86_64)
BiocSingular_1.21.2.tar.gz(r-4.5-noble)BiocSingular_1.21.2.tar.gz(r-4.4-noble)
BiocSingular_1.21.2.tgz(r-4.4-emscripten)BiocSingular_1.21.2.tgz(r-4.3-emscripten)
BiocSingular.pdf |BiocSingular.html✨
BiocSingular/json (API)
NEWS
| # Install 'BiocSingular' in R: |
| install.packages('BiocSingular', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/ltla/biocsingular/issues
On BioConductor:BiocSingular-1.21.1(bioc 3.20)BiocSingular-1.20.0(bioc 3.19)
Last updated 7 days agofrom:37af3b314e
Exports:bsdeferredbsfoldbsparamDeferredMatrixDeferredMatrixSeedDelayedArrayExactParamextract_arrayFastAutoParamIrlbaParamLowRankMatrixLowRankMatrixSeedRandomParamResidualMatrixResidualMatrixSeedrunExactSVDrunIrlbaSVDrunPCArunRandomSVDrunSVDshowt
Dependencies:abindbeachmatBHBiocGenericsBiocParallelcodetoolscpp11crayonDelayedArrayformatRfutile.loggerfutile.optionsIRangesirlbalambda.rlatticeMatrixMatrixGenericsmatrixStatsRcpprsvdS4ArraysS4VectorsScaledMatrixsnowSparseArrayXVectorzlibbioc
Singular value decomposition for Bioconductor packages
Rendered fromdecomposition.Rmdusingknitr::rmarkdownon Jul 04 2024.Last update: 2019-04-11
Started: 2019-02-09
Matrix representations to support decomposition
Rendered fromrepresentations.Rmdusingknitr::rmarkdownon Jul 04 2024.Last update: 2021-01-12
Started: 2019-02-09
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Global SVD options | BiocSingular-options |
| BiocSingularParam classes | BiocSingularParam-class bsdeferred bsfold bsparam ExactParam ExactParam-class FastAutoParam FastAutoParam-class IrlbaParam IrlbaParam-class RandomParam RandomParam-class show,BiocSingularParam-method show,IrlbaParam-method show,RandomParam-method |
| The DeferredMatrix class | DeferredMatrix DeferredMatrixSeed |
| The LowRankMatrix class | DelayedArray,LowRankMatrixSeed-method dim,LowRankMatrixSeed-method dimnames,LowRankMatrixSeed-method dimnames<-,LowRankMatrix,ANY-method extract_array,LowRankMatrixSeed-method LowRankMatrix LowRankMatrix-class LowRankMatrixSeed LowRankMatrixSeed-class show,LowRankMatrixSeed-method t,LowRankMatrix-method [,LowRankMatrix,ANY,ANY,ANY-method |
| The ResidualMatrix class | ResidualMatrix ResidualMatrixSeed |
| Exact SVD | runExactSVD |
| Approximate SVD with 'irlba' | runIrlbaSVD |
| Principal components analysis | runPCA runPCA,ANY-method |
| Approximate SVD with 'rsvd' | runRandomSVD |
| Run SVD | runSVD runSVD,ExactParam-method runSVD,FastAutoParam-method runSVD,IrlbaParam-method runSVD,missing-method runSVD,RandomParam-method |
