Package: BiocFileCache 3.3.0

Lori Shepherd

BiocFileCache: Manage Files Across Sessions

This package creates a persistent on-disk cache of files that the user can add, update, and retrieve. It is useful for managing resources (such as custom Txdb objects) that are costly or difficult to create, web resources, and data files used across sessions.

Authors:Lori Shepherd [aut, cre], Martin Morgan [aut]

BiocFileCache_3.3.0.tar.gz
BiocFileCache_3.3.0.zip(r-4.7)BiocFileCache_3.3.0.zip(r-4.6)BiocFileCache_3.3.0.zip(r-4.5)
BiocFileCache_3.3.0.tgz(r-4.6-any)BiocFileCache_3.3.0.tgz(r-4.5-any)
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BiocFileCache_3.3.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
BiocFileCache/json (API)
NEWS

# Install 'BiocFileCache' in R:

install.packages('BiocFileCache', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/bioconductor/biocfilecache/issues

On BioConductor:BiocFileCache-3.3.0(bioc 3.24)BiocFileCache-3.2.0(bioc 3.23)

dataimport core-package u24ca289073

11.61 score 14 stars 465 packages 628 scripts 46k downloads 2 mentions 29 exports 36 dependencies

Last updated from:20482da7c3. Checks:4 WARNING, 5 ERROR, 1 OK. Indexed: yes.

Target	Result	Time
bioc-checks	WARNING	222
linux-devel-x86_64	WARNING	375
source / vignettes	ERROR	242
linux-release-x86_64	WARNING	359
macos-release-arm64	ERROR	344
macos-oldrel-arm64	WARNING	206
windows-devel	ERROR	128
windows-release	ERROR	119
windows-oldrel	ERROR	128
wasm-release	OK	149

Exports:bfcadd bfccache bfccount bfcdownload bfcinfo bfcmeta bfcmeta<-bfcmetalist bfcmetaremove bfcneedsupdate bfcnew bfcpath bfcquery bfcquerycols bfcremove bfcrid bfcrpath bfcsync bfcupdate BiocFileCache cleanbfc exportbfc getBFCOption importbfc makeBiocFileCacheFromDataFrame makeCachedActiveBinding removebfc setBFCOption show

Dependencies:askpass bit bit64 blob cachem cli cpp11 curl DBI dbplyr dplyr fastmap filelock generics glue httr2 lifecycle magrittr memoise openssl pillar pkgconfig purrr R6 rappdirs rlang RSQLite stringi stringr sys tibble tidyr tidyselect utf8 vctrs withr

Vignettes and/or manual for this package failed to build, some documents may be unavailable. Please inspect thebuild logs for more information.

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
BFCOption These functions help get and set an R variable CACHE that controls the default caching location.	BFCOption getBFCOption setBFCOption
BiocFileCache class	bfcadd bfcadd,BiocFileCache-method bfcadd,missing-method bfccache bfccache,BiocFileCacheBase-method bfccache,missing-method bfccount bfccount,BiocFileCacheBase-method bfccount,missing-method bfccount,tbl_bfc-method bfcdownload bfcdownload,BiocFileCache-method bfcdownload,missing-method bfcinfo bfcinfo,BiocFileCacheBase-method bfcinfo,missing-method bfcmeta bfcmeta,BiocFileCacheBase-method bfcmeta,missing-method bfcmeta<- bfcmeta<-,BiocFileCacheBase-method bfcmetalist bfcmetalist,BiocFileCacheBase-method bfcmetalist,missing-method bfcmetaremove bfcmetaremove,BiocFileCacheBase-method bfcmetaremove,missing-method bfcneedsupdate bfcneedsupdate,BiocFileCacheBase-method bfcneedsupdate,missing-method bfcnew bfcnew,BiocFileCache-method bfcnew,missing-method bfcpath bfcpath,BiocFileCacheBase-method bfcpath,missing-method bfcquery bfcquery,BiocFileCacheBase-method bfcquery,missing-method bfcquerycols bfcquerycols,BiocFileCacheBase-method bfcquerycols,missing-method bfcremove bfcremove,BiocFileCache-method bfcremove,missing-method bfcrid bfcrid,BiocFileCache-method bfcrid,BiocFileCacheReadOnly-method bfcrid,missing-method bfcrid,tbl_bfc-method bfcrpath bfcrpath,BiocFileCacheBase-method bfcrpath,missing-method bfcsync bfcsync,BiocFileCache-method bfcsync,missing-method bfcupdate bfcupdate,BiocFileCache-method bfcupdate,missing-method BiocFileCache BiocFileCache-class cleanbfc cleanbfc,BiocFileCache-method cleanbfc,missing-method exportbfc exportbfc,BiocFileCacheBase-method exportbfc,missing-method importbfc importbfc,character-method length,BiocFileCacheBase-method removebfc removebfc,BiocFileCache-method removebfc,missing-method show,BiocFileCacheBase-method [,BiocFileCache,character,missing-method [,BiocFileCache,missing,missing-method [,BiocFileCacheReadOnly,character,missing-method [,BiocFileCacheReadOnly,missing,missing-method [[,BiocFileCacheBase,character,missing-method [[<-,BiocFileCache,character,missing,character-method
Make BiocFileCache objects from an existing data.frame	makeBiocFileCacheFromDataFrame makeBiocFileCacheFromDataFrame,ANY-method
makeCachedActiveBinding	makeCachedActiveBinding