Package: BiocFileCache 3.3.0

Lori Shepherd

BiocFileCache: Manage Files Across Sessions

This package creates a persistent on-disk cache of files that the user can add, update, and retrieve. It is useful for managing resources (such as custom Txdb objects) that are costly or difficult to create, web resources, and data files used across sessions.

Authors:Lori Shepherd [aut, cre], Martin Morgan [aut]

BiocFileCache_3.3.0.tar.gz
BiocFileCache_3.3.0.zip(r-4.7-any)BiocFileCache_3.3.0.zip(r-4.6-any)BiocFileCache_3.3.0.zip(r-4.5-any)
BiocFileCache_3.3.0.tgz(r-4.6-any)BiocFileCache_3.3.0.tgz(r-4.5-any)
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BiocFileCache_3.3.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
BiocFileCache/json (API)

# Install 'BiocFileCache' in R:
install.packages('BiocFileCache', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/bioconductor/biocfilecache/issues

On BioConductor:BiocFileCache-3.3.0(bioc 3.24)BiocFileCache-3.2.0(bioc 3.23)

dataimportcore-packageu24ca289073

13.02 score 14 stars 541 packages 788 scripts 55k downloads 2 mentions 29 exports 35 dependencies

Last updated from:20482da7c3. Checks:1 WARNING, 9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksWARNING173
linux-develOK250
source / vignettesOK289
linux-releaseOK332
macos-releaseOK145
macos-oldrelOK143
windows-develOK121
windows-releaseOK156
windows-oldrelOK129
wasm-releaseOK137

Exports:bfcaddbfccachebfccountbfcdownloadbfcinfobfcmetabfcmeta<-bfcmetalistbfcmetaremovebfcneedsupdatebfcnewbfcpathbfcquerybfcquerycolsbfcremovebfcridbfcrpathbfcsyncbfcupdateBiocFileCachecleanbfcexportbfcgetBFCOptionimportbfcmakeBiocFileCacheFromDataFramemakeCachedActiveBindingremovebfcsetBFCOptionshow

Dependencies:askpassbitbit64blobcachemclicpp11curlDBIdbplyrdplyrfastmapfilelockgenericsgluehttr2lifecyclemagrittrmemoiseopensslpillarpkgconfigpurrrR6rlangRSQLitestringistringrsystibbletidyrtidyselectutf8vctrswithr

BiocFileCache: Managing File Resources Across Sessions
Overview | Installation and Loading | Creating / Loading the Cache | Adding / Tracking Resources | Caveat | Investigating / Accessing Resources | Updating Resource Entries or Local Copy of Remote Data | Adding MetaData | Removing Resources | Exporting and Importing Cache | Creating a Cache from Existing Data | Create a BiocFileCache from an Existing data.frame | Cleaning or Removing Cache | Access Behind a Proxy | Other configuration options for resource downloading | Group Cache Access | Summary | SessionInfo
Rendered fromBiocFileCache.Rmdusingknitr::rmarkdown

Last update: 2025-08-28
Started: 2017-02-08

BiocFileCache Use Cases
Overview | Installation and Loading | Creating / Loading the Cache | Use Cases | Local cache of an internet resource | Cache of experimental computations | Cache to manage package data | Processing web resources before caching | Access Behind a Proxy | Other configuration options for resource downloading | Group Cache Access | Summary | SessionInfo
Rendered fromBiocFileCache_UseCases.Rmdusingknitr::rmarkdown

Last update: 2025-05-15
Started: 2024-10-02

BiocFileCache Troubleshooting
Overview | Installation and Loading | Creating / Loading the Cache | Access Behind a Proxy | Other configuration options for resource downloading | Group Cache Access | Lock file Troubleshooting | Permissions | Cannot lock file / no lock available | Default Caching Location Update | Option 1: Moving Files | Option 2: Specify a Cache Location Explicitly | Option 3: Delete the old cache | SessionInfo
Rendered fromBiocFileCache_Troubleshooting.Rmdusingknitr::rmarkdown

Last update: 2025-05-15
Started: 2024-10-02

Readme and manuals

Help Manual

Help pageTopics
BFCOption These functions help get and set an R variable CACHE that controls the default caching location.BFCOption getBFCOption setBFCOption
BiocFileCache classbfcadd bfcadd,BiocFileCache-method bfcadd,missing-method bfccache bfccache,BiocFileCacheBase-method bfccache,missing-method bfccount bfccount,BiocFileCacheBase-method bfccount,missing-method bfccount,tbl_bfc-method bfcdownload bfcdownload,BiocFileCache-method bfcdownload,missing-method bfcinfo bfcinfo,BiocFileCacheBase-method bfcinfo,missing-method bfcmeta bfcmeta,BiocFileCacheBase-method bfcmeta,missing-method bfcmeta<- bfcmeta<-,BiocFileCacheBase-method bfcmetalist bfcmetalist,BiocFileCacheBase-method bfcmetalist,missing-method bfcmetaremove bfcmetaremove,BiocFileCacheBase-method bfcmetaremove,missing-method bfcneedsupdate bfcneedsupdate,BiocFileCacheBase-method bfcneedsupdate,missing-method bfcnew bfcnew,BiocFileCache-method bfcnew,missing-method bfcpath bfcpath,BiocFileCacheBase-method bfcpath,missing-method bfcquery bfcquery,BiocFileCacheBase-method bfcquery,missing-method bfcquerycols bfcquerycols,BiocFileCacheBase-method bfcquerycols,missing-method bfcremove bfcremove,BiocFileCache-method bfcremove,missing-method bfcrid bfcrid,BiocFileCache-method bfcrid,BiocFileCacheReadOnly-method bfcrid,missing-method bfcrid,tbl_bfc-method bfcrpath bfcrpath,BiocFileCacheBase-method bfcrpath,missing-method bfcsync bfcsync,BiocFileCache-method bfcsync,missing-method bfcupdate bfcupdate,BiocFileCache-method bfcupdate,missing-method BiocFileCache BiocFileCache-class cleanbfc cleanbfc,BiocFileCache-method cleanbfc,missing-method exportbfc exportbfc,BiocFileCacheBase-method exportbfc,missing-method importbfc importbfc,character-method length,BiocFileCacheBase-method removebfc removebfc,BiocFileCache-method removebfc,missing-method show,BiocFileCacheBase-method [,BiocFileCache,character,missing-method [,BiocFileCache,missing,missing-method [,BiocFileCacheReadOnly,character,missing-method [,BiocFileCacheReadOnly,missing,missing-method [[,BiocFileCacheBase,character,missing-method [[<-,BiocFileCache,character,missing,character-method
Make BiocFileCache objects from an existing data.framemakeBiocFileCacheFromDataFrame makeBiocFileCacheFromDataFrame,ANY-method
makeCachedActiveBindingmakeCachedActiveBinding