Package: BiocFHIR 1.7.0

Vincent Carey

BiocFHIR: Illustration of FHIR ingestion and transformation using R

FHIR R4 bundles in JSON format are derived from https://synthea.mitre.org/downloads. Transformation inspired by a kaggle notebook published by Dr Alexander Scarlat, https://www.kaggle.com/code/drscarlat/fhir-starter-parse-healthcare-bundles-into-tables. This is a very limited illustration of some basic parsing and reorganization processes. Additional tooling will be required to move beyond the Synthea data illustrations.

Authors:Vincent Carey [aut, cre]

BiocFHIR_1.7.0.tar.gz
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BiocFHIR.pdf |BiocFHIR.html✨
BiocFHIR/json (API)
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Bug tracker:https://github.com/vjcitn/biocfhir/issues

On BioConductor:BiocFHIR-1.7.0(bioc 3.20)BiocFHIR-1.6.0(bioc 3.19)

bioconductor-package

25 exports 0.49 score 59 dependencies

Last updated 2 months agofrom:b363fa4116

Exports:add_proceduresavailable_retention_schemasbuild_proccond_igraphdisplay_proccond_igraphFHIR_ResourceTypesFHIR_retention_schemasFHIRtabsfreq_appgetHumanNamemake_condition_graphmake_test_json_setprocess_AllergyIntoleranceprocess_CarePlanprocess_Claimprocess_Conditionprocess_Encounterprocess_fhir_bundleprocess_Immunizationprocess_MedicationRequestprocess_Observationprocess_Patientprocess_Procedurestack_fhirsummarise_bundlessummary_selections

Dependencies:base64encBiocBaseUtilsBiocGenericsbslibcachemclicommonmarkcpp11crayoncrosstalkdigestdplyrDTevaluatefansifastmapfontawesomefsgenericsgluegraphhighrhtmltoolshtmlwidgetshttpuvjquerylibjsonliteknitrlaterlazyevallifecyclemagrittrmemoisemimepillarpkgconfigpromisespurrrR6rappdirsRcpprlangrmarkdownsassshinysourcetoolsstringistringrtibbletidyrtidyselecttinytexutf8vctrsvisNetworkwithrxfunxtableyaml