Package: BiocBook 1.5.0

Jacques Serizay

BiocBook: Write, containerize, publish and version Quarto books with Bioconductor

A BiocBook can be created by authors (e.g. R developers, but also scientists, teachers, communicators, ...) who wish to 1) write (compile a body of biological and/or bioinformatics knowledge), 2) containerize (provide Docker images to reproduce the examples illustrated in the compendium), 3) publish (deploy an online book to disseminate the compendium), and 4) version (automatically generate specific online book versions and Docker images for specific Bioconductor releases).

Authors:Jacques Serizay [aut, cre]

BiocBook_1.5.0.tar.gz
BiocBook_1.5.0.zip(r-4.5)BiocBook_1.5.0.zip(r-4.4)BiocBook_1.5.0.zip(r-4.3)
BiocBook_1.5.0.tgz(r-4.5-any)BiocBook_1.5.0.tgz(r-4.4-any)BiocBook_1.5.0.tgz(r-4.3-any)
BiocBook_1.5.0.tar.gz(r-4.5-noble)BiocBook_1.5.0.tar.gz(r-4.4-noble)
BiocBook_1.5.0.tgz(r-4.4-emscripten)BiocBook_1.5.0.tgz(r-4.3-emscripten)
BiocBook.pdf |BiocBook.html✨
BiocBook/json (API)

# Install 'BiocBook' in R:

install.packages('BiocBook', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/js2264/biocbook/issues

On BioConductor:BiocBook-1.5.0(bioc 3.21)BiocBook-1.4.0(bioc 3.20)

infrastructure reportwriting software

4.48 score 3 stars 4 scripts 154 downloads 18 exports 76 dependencies

Last updated 4 months agofrom:0148dc336a. Checks:5 OK, 3 ERROR. Indexed: yes.

Target	Result	Latest binary
Doc / Vignettes	OK	Jan 28 2025
R-4.5-win	ERROR	Jan 28 2025
R-4.5-mac	OK	Jan 28 2025
R-4.5-linux	OK	Jan 28 2025
R-4.4-win	ERROR	Jan 28 2025
R-4.4-mac	OK	Jan 28 2025
R-4.3-win	ERROR	Jan 28 2025
R-4.3-mac	OK	Jan 28 2025

Exports:add_chapter add_preamble BiocBook chapters check_deps edit_bib edit_css edit_page edit_requirements_yml edit_yml init path preview publish quick_init releases show status

Dependencies:askpass available base64enc BiocGenerics bslib cachem cli clipr clisymbols crayon credentials curl desc digest dplyr evaluate fansi fastmap fontawesome fs generics gert gh gitcreds glue highr htmltools httr httr2 ini janeaustenr jquerylib jsonlite knitr later lattice lifecycle magrittr Matrix memoise mime openssl pillar pkgconfig processx ps purrr quarto R6 rappdirs Rcpp renv rlang rmarkdown rprojroot rstudioapi sass SnowballC stringdist stringi stringr sys tibble tidyselect tidytext tinytex tokenizers usethis utf8 vctrs whisker withr xfun yaml yesno zip

BiocBook: write Quarto books with Bioconductor

Rendered fromBiocBook.Rmdusingknitr::rmarkdownon Jan 28 2025.

Last update: 2023-10-04
Started: 2023-09-28

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Handling BiocBook directories	BiocBook BiocBook-class chapters chapters,BiocBook-method init path,BiocBook-method quick_init releases releases,BiocBook-method show,BiocBook-method
Editing BiocBook accessory files	add_chapter add_preamble BiocBook-editing check_deps edit_bib edit_css edit_page edit_requirements_yml edit_yml preview publish status