Package: BiocBook 1.11.0

Jacques Serizay

BiocBook: Write, containerize, publish and version Quarto books with Bioconductor

A BiocBook can be created by authors (e.g. R developers, but also scientists, teachers, communicators, ...) who wish to 1) write (compile a body of biological and/or bioinformatics knowledge), 2) containerize (provide Docker images to reproduce the examples illustrated in the compendium), 3) publish (deploy an online book to disseminate the compendium), and 4) version (automatically generate specific online book versions and Docker images for specific Bioconductor releases).

Authors:Jacques Serizay [aut, cre]

BiocBook_1.11.0.tar.gz
BiocBook_1.11.0.zip(r-4.7)BiocBook_1.11.0.zip(r-4.6)BiocBook_1.11.0.zip(r-4.5)
BiocBook_1.11.0.tgz(r-4.6-any)BiocBook_1.11.0.tgz(r-4.5-any)
BiocBook_1.11.0.tar.gz(r-4.7-any)BiocBook_1.11.0.tar.gz(r-4.6-any)
BiocBook_1.11.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
BiocBook/json (API)

# Install 'BiocBook' in R:

install.packages('BiocBook', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/js2264/biocbook/issues

On BioConductor:BiocBook-1.11.0(bioc 3.24)BiocBook-1.10.0(bioc 3.23)

infrastructure reportwriting software quarto

5.02 score 7 stars 6 scripts 320 downloads 18 exports 65 dependencies

Last updated from:868cf0fb4b. Checks:1 NOTE, 9 OK. Indexed: yes.

Target	Result	Time
bioc-checks	NOTE	159
linux-devel-x86_64	OK	227
source / vignettes	OK	230
linux-release-x86_64	OK	267
macos-release-arm64	OK	261
macos-oldrel-arm64	OK	190
windows-devel	OK	209
windows-release	OK	197
windows-oldrel	OK	191
wasm-release	OK	126

Exports:add_chapter add_preamble BiocBook chapters check_deps edit_bib edit_css edit_page edit_requirements_yml edit_yml init path preview publish quick_init releases show status

Dependencies:askpass base64enc BiocGenerics bslib cachem cli clipr crayon credentials curl desc digest dplyr evaluate fastmap fontawesome fs generics gert gitcreds glue highr htmltools httr httr2 ini jquerylib jsonlite knitr later lifecycle magrittr memoise mime openssl pak pillar pkgconfig processx ps purrr quarto R6 rappdirs Rcpp renv rlang rmarkdown rprojroot rstudioapi sass stringi stringr sys tibble tidyselect tinytex usethis utf8 vctrs whisker withr xfun yaml zip

BiocBook: write Quarto books with Bioconductor

Rendered fromBiocBook.Rmdusingknitr::rmarkdownon May 30 2026.

Last update: 2023-10-04
Started: 2023-09-28

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Handling BiocBook directories	BiocBook BiocBook-class chapters chapters,BiocBook-method init path,BiocBook-method quick_init releases releases,BiocBook-method show,BiocBook-method
Editing BiocBook accessory files	add_chapter add_preamble BiocBook-editing check_deps edit_bib edit_css edit_page edit_requirements_yml edit_yml preview publish status