Package: BiocBook 1.3.0

Jacques Serizay

BiocBook: Write, containerize, publish and version Quarto books with Bioconductor

A BiocBook can be created by authors (e.g. R developers, but also scientists, teachers, communicators, ...) who wish to 1) write (compile a body of biological and/or bioinformatics knowledge), 2) containerize (provide Docker images to reproduce the examples illustrated in the compendium), 3) publish (deploy an online book to disseminate the compendium), and 4) version (automatically generate specific online book versions and Docker images for specific Bioconductor releases).

Authors:Jacques Serizay [aut, cre]

BiocBook_1.3.0.tar.gz
BiocBook_1.3.0.zip(r-4.5)BiocBook_1.3.0.zip(r-4.4)BiocBook_1.3.0.zip(r-4.3)
BiocBook_1.3.0.tgz(r-4.4-any)BiocBook_1.3.0.tgz(r-4.3-any)
BiocBook_1.3.0.tar.gz(r-4.5-noble)BiocBook_1.3.0.tar.gz(r-4.4-noble)
BiocBook_1.3.0.tgz(r-4.4-emscripten)BiocBook_1.3.0.tgz(r-4.3-emscripten)
BiocBook.pdf |BiocBook.html
BiocBook/json (API)

# Install 'BiocBook' in R:
install.packages('BiocBook', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/js2264/biocbook/issues

On BioConductor:BiocBook-1.3.0(bioc 3.20)BiocBook-1.2.0(bioc 3.19)

bioconductor-package

18 exports 1.75 score 76 dependencies

Last updated 2 months agofrom:f781ac38d0

Exports:add_chapteradd_preambleBiocBookchapterscheck_depsedit_bibedit_cssedit_pageedit_requirements_ymledit_ymlinitpathpreviewpublishquick_initreleasesshowstatus

Dependencies:askpassavailablebase64encBiocGenericsbslibcachemclicliprclisymbolscrayoncredentialscurldescdigestdplyrevaluatefansifastmapfontawesomefsgenericsgertghgitcredsgluehighrhtmltoolshttrhttr2inijaneaustenrjquerylibjsonliteknitrlaterlatticelifecyclemagrittrMatrixmemoisemimeopensslpillarpkgconfigprocessxpspurrrquartoR6rappdirsRcpprenvrlangrmarkdownrprojrootrstudioapisassSnowballCstringdiststringistringrsystibbletidyselecttidytexttinytextokenizersusethisutf8vctrswhiskerwithrxfunyamlyesnozip

BiocBook: write Quarto books with Bioconductor

Rendered fromBiocBook.Rmdusingknitr::rmarkdownon Jun 24 2024.

Last update: 2023-10-04
Started: 2023-09-28

Readme and manuals

Help Manual

Help pageTopics
Handling BiocBook directoriesBiocBook BiocBook-class chapters chapters,BiocBook-method init path,BiocBook-method quick_init releases releases,BiocBook-method show,BiocBook-method
Editing BiocBook accessory filesadd_chapter add_preamble BiocBook-editing check_deps edit_bib edit_css edit_page edit_requirements_yml edit_yml preview publish status