Package: BioCor 1.29.0
BioCor: Functional similarities
Calculates functional similarities based on the pathways described on KEGG and REACTOME or in gene sets. These similarities can be calculated for pathways or gene sets, genes, or clusters and combined with other similarities. They can be used to improve networks, gene selection, testing relationships...
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BioCor_1.29.0.tar.gz
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NEWS
# Install 'BioCor' in R: |
install.packages('BioCor', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/llrs/biocor/issues
On BioConductor:BioCor-1.29.0(bioc 3.20)BioCor-1.28.0(bioc 3.19)
Last updated 2 months agofrom:f08087ef3f
Exports:addSimilaritiesAintoBclusterGeneSimclusterSimcombinadiccombineScorescombineScoresParcombineSourcesD2JdiceSimduplicateIndicesgeneSiminverseListJ2DmclusterGeneSimmclusterSimmgeneSimmpathSimpathSimplot_dataplot_similarityremoveDupseq2matsimilaritiesweighted.prodweighted.sum
Dependencies:annotateAnnotationDbiaskpassBHBiobaseBiocGenericsBiocParallelBiostringsbitbit64blobcachemclicodetoolscpp11crayoncurlDBIfastmapformatRfutile.loggerfutile.optionsGenomeInfoDbGenomeInfoDbDatagluegraphGSEABasehttrIRangesjsonliteKEGGRESTlambda.rlatticelifecycleMatrixmemoisemimeopensslpkgconfigplogrpngR6rlangRSQLiteS4VectorssnowsysUCSC.utilsvctrsXMLxtableXVectorzlibbioc