Package: BioCor 1.31.0
Lluís Revilla Sancho
BioCor: Functional similarities
Calculates functional similarities based on the pathways described on KEGG and REACTOME or in gene sets. These similarities can be calculated for pathways or gene sets, genes, or clusters and combined with other similarities. They can be used to improve networks, gene selection, testing relationships...
Authors:
BioCor_1.31.0.tar.gz
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BioCor.pdf |BioCor.html✨
BioCor/json (API)
NEWS
| # Install 'BioCor' in R: |
| install.packages('BioCor', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/llrs/biocor/issues
On BioConductor:BioCor-1.29.0(bioc 3.20)BioCor-1.28.0(bioc 3.19)
statisticalmethodclusteringgeneexpressionnetworkpathwaysnetworkenrichmentsystemsbiologybioconductor-packagesbioinformaticsfunctional-similaritygenegene-setspathway-analysissimilaritysimilarity-measurement
Last updated 23 days agofrom:59fbed3856. Checks:OK: 2 NOTE: 5. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Oct 30 2024 |
| R-4.5-win | NOTE | Oct 30 2024 |
| R-4.5-linux | NOTE | Oct 30 2024 |
| R-4.4-win | NOTE | Oct 30 2024 |
| R-4.4-mac | NOTE | Oct 30 2024 |
| R-4.3-win | OK | Oct 30 2024 |
| R-4.3-mac | NOTE | Oct 30 2024 |
Exports:addSimilaritiesAintoBclusterGeneSimclusterSimcombinadiccombineScorescombineScoresParcombineSourcesD2JdiceSimduplicateIndicesgeneSiminverseListJ2DmclusterGeneSimmclusterSimmgeneSimmpathSimpathSimplot_dataplot_similarityremoveDupseq2matsimilaritiesweighted.prodweighted.sum
Dependencies:annotateAnnotationDbiaskpassBHBiobaseBiocGenericsBiocParallelBiostringsbitbit64blobcachemclicodetoolscpp11crayoncurlDBIfastmapformatRfutile.loggerfutile.optionsGenomeInfoDbGenomeInfoDbDatagluegraphGSEABasehttrIRangesjsonliteKEGGRESTlambda.rlatticelifecycleMatrixmemoisemimeopensslpkgconfigplogrpngR6rlangRSQLiteS4VectorssnowsysUCSC.utilsvctrsXMLxtableXVectorzlibbioc
