Package: BioCor 1.31.0
Lluís Revilla Sancho
BioCor: Functional similarities
Calculates functional similarities based on the pathways described on KEGG and REACTOME or in gene sets. These similarities can be calculated for pathways or gene sets, genes, or clusters and combined with other similarities. They can be used to improve networks, gene selection, testing relationships...
Authors:
BioCor_1.31.0.tar.gz
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NEWS
| # Install 'BioCor' in R: |
| install.packages('BioCor', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/llrs/biocor/issues
Pkgdown site:https://llrs.github.io
On BioConductor:BioCor-1.31.0(bioc 3.21)BioCor-1.30.0(bioc 3.20)
statisticalmethodclusteringgeneexpressionnetworkpathwaysnetworkenrichmentsystemsbiologybioconductor-packagesbioinformaticsfunctional-similaritygenegene-setspathway-analysissimilaritysimilarity-measurement
Last updated 5 months agofrom:59fbed3856. Checks:3 OK, 5 NOTE. Indexed: yes.
| Target | Result | Latest binary |
|---|---|---|
| Doc / Vignettes | OK | Feb 27 2025 |
| R-4.5-win | NOTE | Feb 27 2025 |
| R-4.5-mac | NOTE | Feb 27 2025 |
| R-4.5-linux | NOTE | Feb 27 2025 |
| R-4.4-win | NOTE | Feb 27 2025 |
| R-4.4-mac | NOTE | Feb 27 2025 |
| R-4.3-win | OK | Feb 27 2025 |
| R-4.3-mac | OK | Feb 27 2025 |
Exports:addSimilaritiesAintoBclusterGeneSimclusterSimcombinadiccombineScorescombineScoresParcombineSourcesD2JdiceSimduplicateIndicesgeneSiminverseListJ2DmclusterGeneSimmclusterSimmgeneSimmpathSimpathSimplot_dataplot_similarityremoveDupseq2matsimilaritiesweighted.prodweighted.sum
Dependencies:annotateAnnotationDbiaskpassBHBiobaseBiocGenericsBiocParallelBiostringsbitbit64blobcachemclicodetoolscpp11crayoncurlDBIfastmapformatRfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomeInfoDbDatagluegraphGSEABasehttrIRangesjsonliteKEGGRESTlambda.rlatticelifecycleMatrixmemoisemimeopensslpkgconfigplogrpngR6rlangRSQLiteS4VectorssnowsysUCSC.utilsvctrsXMLxtableXVector
