Package: BioCartaImage 1.5.0
Zuguang Gu
BioCartaImage: BioCarta Pathway Images
The core functionality of the package is to provide coordinates of genes on the BioCarta pathway images and to provide methods to add self-defined graphics to the genes of interest.
Authors:
BioCartaImage_1.5.0.tar.gz
BioCartaImage_1.5.0.zip(r-4.5)BioCartaImage_1.5.0.zip(r-4.4)BioCartaImage_1.5.0.zip(r-4.3)
BioCartaImage_1.5.0.tgz(r-4.4-any)BioCartaImage_1.5.0.tgz(r-4.3-any)
BioCartaImage_1.5.0.tar.gz(r-4.5-noble)BioCartaImage_1.5.0.tar.gz(r-4.4-noble)
BioCartaImage_1.5.0.tgz(r-4.4-emscripten)BioCartaImage_1.5.0.tgz(r-4.3-emscripten)
BioCartaImage.pdf |BioCartaImage.html✨
BioCartaImage/json (API)
NEWS
| # Install 'BioCartaImage' in R: |
| install.packages('BioCartaImage', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/jokergoo/biocartaimage/issues
- BC2ENTREZ - Pre-computed data objects
- BIOCARTA_PATHWAYS - Pre-computed data objects
- PATHWAY2BC - Pre-computed data objects
- PATHWAY2ENTREZ - Pre-computed data objects
- PATHWAY2MSIGDB - Pre-computed data objects
On BioConductor:BioCartaImage-1.5.0(bioc 3.21)BioCartaImage-1.4.0(bioc 3.20)
softwarepathwaysbiocartavisualization
Last updated 2 months agofrom:46b0932978. Checks:OK: 7. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Dec 08 2024 |
| R-4.5-win | OK | Dec 08 2024 |
| R-4.5-linux | OK | Dec 08 2024 |
| R-4.4-win | OK | Dec 08 2024 |
| R-4.4-mac | OK | Dec 08 2024 |
| R-4.3-win | OK | Dec 08 2024 |
| R-4.3-mac | OK | Dec 08 2024 |
Exports:all_pathwaysBC2ENTREZBIOCARTA_PATHWAYSbiocartaGrobgenes_in_pathwayget_pathwayget_pathway_imagegrid.biocartaimage_dimensionmark_genePATHWAY2BCPATHWAY2ENTREZPATHWAY2MSIGDBpos_by_polygon
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| The BioCartaImage package | BioCartaImage-package BioCartaImage |
| All BioCarta pathways | all_pathways |
| Pre-computed data objects | BC2ENTREZ BIOCARTA_PATHWAYS PATHWAY2BC PATHWAY2ENTREZ PATHWAY2MSIGDB |
| Genes in a pathway | genes_in_pathway |
| Get a single pathway | get_pathway |
| Download the pathway image | get_pathway_image image_dimension |
| Draw a BioCarta pathway | biocartaGrob grid.biocarta |
| Internal functions for drawing the pathway grob | grobHeight.biocarta_pathway_grob grobWidth.biocarta_pathway_grob makeContext.biocarta_pathway_grob |
| Mark a gene on the pathway image | mark_gene |
| Position around a polygon | pos_by_polygon |
| Print the biocarta_pathway object | print.biocarta_pathway |
