Overview | Biclustering analysis | Additionnal analyses | Building html report
Package: BicARE 1.71.0
Pierre Gestraud
BicARE: Biclustering Analysis and Results Exploration
Biclustering Analysis and Results Exploration.
Authors:
BicARE_1.71.0.tar.gz
BicARE_1.71.0.zip(r-4.7)BicARE_1.71.0.zip(r-4.6)BicARE_1.71.0.zip(r-4.5)
BicARE_1.71.0.tgz(r-4.6-x86_64)BicARE_1.71.0.tgz(r-4.6-arm64)BicARE_1.71.0.tgz(r-4.5-x86_64)BicARE_1.71.0.tgz(r-4.5-arm64)
BicARE_1.71.0.tar.gz(r-4.7-arm64)BicARE_1.71.0.tar.gz(r-4.7-x86_64)BicARE_1.71.0.tar.gz(r-4.6-arm64)BicARE_1.71.0.tar.gz(r-4.6-x86_64)
BicARE_1.71.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
BicARE/json (API)
| # Install 'BicARE' in R: |
| install.packages('BicARE', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Datasets:
- sample.bicData - Example data set for BicARE
- sample.biclustering - Example biclustering object
On BioConductor:BicARE-1.71.0(bioc 3.24)BicARE-1.70.0(bioc 3.23)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
microarraytranscriptionclustering
Last updated from:bc072a2096. Checks:1 ERROR, 11 NOTE, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | ERROR | 167 | ||
| linux-devel-arm64 | NOTE | 296 | ||
| linux-devel-x86_64 | NOTE | 301 | ||
| source / vignettes | OK | 254 | ||
| linux-release-arm64 | NOTE | 299 | ||
| linux-release-x86_64 | NOTE | 330 | ||
| macos-release-arm64 | NOTE | 186 | ||
| macos-release-x86_64 | NOTE | 404 | ||
| macos-oldrel-arm64 | NOTE | 216 | ||
| macos-oldrel-x86_64 | NOTE | 430 | ||
| windows-devel | NOTE | 242 | ||
| windows-release | NOTE | 237 | ||
| windows-oldrel | NOTE | 226 | ||
| wasm-release | OK | 119 |
Exports:biclusterFLOCmakeReportresiduetestAnnottestSet
Dependencies:annotateAnnotationDbiaskpassBiobaseBiocGenericsBiostringsbitbit64blobcachemclicpp11crayoncurlDBIfastmapgenericsglueGO.dbgraphGSEABasehttrIRangesjsonliteKEGGRESTlatticelifecycleMASSMatrixmemoisemimemulttestopensslpkgconfigpngR6rlangRSQLiteS4VectorsSeqinfosurvivalsysvctrsXMLxtableXVector
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| BicARE | BicARE-package BicARE |
| Extract a bicluster | bicluster |
| Performs the FLOC algorithm | FLOC |
| Export the results as html files | makeReport |
| Residue of a matrix | residue |
| Example data set for BicARE | sample.bicData |
| Example biclustering object | sample.biclustering |
| Find samples annotations over-represented covariates in biclusters | testAnnot |
| Find gene sets that are enriched in a bicluster | testSet |
