Package: BicARE 1.65.0
Pierre Gestraud
BicARE: Biclustering Analysis and Results Exploration
Biclustering Analysis and Results Exploration.
Authors:
BicARE_1.65.0.tar.gz
BicARE_1.65.0.zip(r-4.5)BicARE_1.65.0.zip(r-4.4)BicARE_1.65.0.zip(r-4.3)
BicARE_1.65.0.tgz(r-4.4-x86_64)BicARE_1.65.0.tgz(r-4.4-arm64)BicARE_1.65.0.tgz(r-4.3-x86_64)BicARE_1.65.0.tgz(r-4.3-arm64)
BicARE_1.65.0.tar.gz(r-4.5-noble)BicARE_1.65.0.tar.gz(r-4.4-noble)
BicARE_1.65.0.tgz(r-4.4-emscripten)BicARE_1.65.0.tgz(r-4.3-emscripten)
BicARE.pdf |BicARE.html✨
BicARE/json (API)
# Install 'BicARE' in R: |
install.packages('BicARE', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
- sample.bicData - Example data set for BicARE
- sample.biclustering - Example biclustering object
On BioConductor:BicARE-1.65.0(bioc 3.21)BicARE-1.64.0(bioc 3.20)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
microarraytranscriptionclustering
Last updated 2 months agofrom:70d56042b0. Checks:OK: 1 NOTE: 8. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Nov 29 2024 |
R-4.5-win-x86_64 | NOTE | Nov 29 2024 |
R-4.5-linux-x86_64 | NOTE | Nov 29 2024 |
R-4.4-win-x86_64 | NOTE | Nov 29 2024 |
R-4.4-mac-x86_64 | NOTE | Nov 29 2024 |
R-4.4-mac-aarch64 | NOTE | Nov 29 2024 |
R-4.3-win-x86_64 | NOTE | Nov 29 2024 |
R-4.3-mac-x86_64 | NOTE | Nov 29 2024 |
R-4.3-mac-aarch64 | NOTE | Nov 29 2024 |
Exports:biclusterFLOCmakeReportresiduetestAnnottestSet
Dependencies:annotateAnnotationDbiaskpassBiobaseBiocGenericsBiostringsbitbit64blobcachemclicpp11crayoncurlDBIfastmapgenericsGenomeInfoDbGenomeInfoDbDataglueGO.dbgraphGSEABasehttrIRangesjsonliteKEGGRESTlatticelifecycleMASSMatrixmemoisemimemulttestopensslpkgconfigplogrpngR6rlangRSQLiteS4VectorssurvivalsysUCSC.utilsvctrsXMLxtableXVectorzlibbioc
Readme and manuals
Help Manual
Help page | Topics |
---|---|
BicARE | BicARE-package BicARE |
Extract a bicluster | bicluster |
Performs the FLOC algorithm | FLOC |
Export the results as html files | makeReport |
Residue of a matrix | residue |
Example data set for BicARE | sample.bicData |
Example biclustering object | sample.biclustering |
Find samples annotations over-represented covariates in biclusters | testAnnot |
Find gene sets that are enriched in a bicluster | testSet |