Package: BicARE 1.63.0
Pierre Gestraud
BicARE: Biclustering Analysis and Results Exploration
Biclustering Analysis and Results Exploration.
Authors:
BicARE_1.63.0.tar.gz
BicARE_1.63.0.zip(r-4.5)BicARE_1.63.0.zip(r-4.4)BicARE_1.63.0.zip(r-4.3)
BicARE_1.63.0.tgz(r-4.4-arm64)BicARE_1.63.0.tgz(r-4.4-x86_64)BicARE_1.63.0.tgz(r-4.3-arm64)BicARE_1.63.0.tgz(r-4.3-x86_64)
BicARE_1.63.0.tar.gz(r-4.5-noble)BicARE_1.63.0.tar.gz(r-4.4-noble)
BicARE_1.63.0.tgz(r-4.4-emscripten)BicARE_1.63.0.tgz(r-4.3-emscripten)
BicARE.pdf |BicARE.html✨
BicARE/json (API)
| # Install 'BicARE' in R: |
| install.packages('BicARE', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
- sample.bicData - Example data set for BicARE
- sample.biclustering - Example biclustering object
On BioConductor:BicARE-1.63.0(bioc 3.20)BicARE-1.62.0(bioc 3.19)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 2 months agofrom:b8ff3f3e2a
Exports:biclusterFLOCmakeReportresiduetestAnnottestSet
Dependencies:annotateAnnotationDbiaskpassBiobaseBiocGenericsBiostringsbitbit64blobcachemclicpp11crayoncurlDBIfastmapGenomeInfoDbGenomeInfoDbDataglueGO.dbgraphGSEABasehttrIRangesjsonliteKEGGRESTlatticelifecycleMASSMatrixmemoisemimemulttestopensslpkgconfigplogrpngR6rlangRSQLiteS4VectorssurvivalsysUCSC.utilsvctrsXMLxtableXVectorzlibbioc
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| BicARE | BicARE-package BicARE |
| Extract a bicluster | bicluster |
| Performs the FLOC algorithm | FLOC |
| Export the results as html files | makeReport |
| Residue of a matrix | residue |
| Example data set for BicARE | sample.bicData |
| Example biclustering object | sample.biclustering |
| Find samples annotations over-represented covariates in biclusters | testAnnot |
| Find gene sets that are enriched in a bicluster | testSet |