Package: BgeeCall 1.29.3

How present/absent calls are generated | Bgee database | Reference intergenic regions | Threshold of present/absent | Installation | How to use the BgeeCall package | Load the package | Quick start | Generate present/absent calls for more than one RNA-Seq library | Parallized generation of present/absent calls on a cluster | Reference intergenic sequences | Releases of reference intergenic sequences | Core reference intergenic from Bgee | Community reference intergenic | Your own reference intergenic | Generate present/absent calls at transcript level (beta version) | Tune how to use kallisto | Download or reuse your own kallisto | Edit kallisto quant attributes | Choose between two kmer size | Generate calls for a subset of RNA-Seq runs | Modify present/absent threshold | Default pValue approach | Intergenic threshold approach | qValue threshold approach | Run BgeeCall in quiet mode | Do not rerun parts of the pipeline | Ignore transcript version | Generate calls with a simple arborescence of directories | Change directory where calls are saved | Modify slurm options | Number of jobs | Do not submit the jobs | Modify slurm options | Add modules to your environment | Modify BgeeCall objects | Merging multiple libraries | Arguments and user file to perform the merging