Package: BUS 1.61.0
Yuanhua Liu
BUS: Gene network reconstruction
This package can be used to compute associations among genes (gene-networks) or between genes and some external traits (i.e. clinical).
Authors:
BUS_1.61.0.tar.gz
BUS_1.61.0.zip(r-4.5)BUS_1.61.0.zip(r-4.4)BUS_1.61.0.zip(r-4.3)
BUS_1.61.0.tgz(r-4.4-arm64)BUS_1.61.0.tgz(r-4.4-x86_64)BUS_1.61.0.tgz(r-4.3-arm64)BUS_1.61.0.tgz(r-4.3-x86_64)
BUS_1.61.0.tar.gz(r-4.5-noble)BUS_1.61.0.tar.gz(r-4.4-noble)
BUS_1.61.0.tgz(r-4.4-emscripten)BUS_1.61.0.tgz(r-4.3-emscripten)
BUS.pdf |BUS.html✨
BUS/json (API)
NEWS
| # Install 'BUS' in R: |
| install.packages('BUS', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
- copasi - Copasi data
- tumors.mRNA - Gene expression data from Human brain tumors
- tumors.miRNA - MiRNA data from Human brain tumors
On BioConductor:BUS-1.61.0(bioc 3.20)BUS-1.60.0(bioc 3.19)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 2 months agofrom:51ec0f7b52
Exports:BUSgene.pvaluegene.similaritygene.trait.pvaluegene.trait.similaritypred.network
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| For network reconstruction. | BUS-package |
| A wrapper function for matrices of p-value and predicted network | BUS |
| copasi data | copasi |
| Calculates p-value for gene-gene interaction | gene.pvalue |
| Calculate adjacency matrix for gene-gene interaction | gene.similarity |
| Calculate p-value for gene-trait interaction | gene.trait.pvalue |
| Calculate similarity for gene-trait interaction | gene.trait.similarity |
| Predict the network | pred.network |
| miRNA data from Human brain tumors | tumors.miRNA |
| Gene expression data from Human brain tumors | tumors.mRNA |