Package: BUS 1.63.0
Yuanhua Liu
BUS: Gene network reconstruction
This package can be used to compute associations among genes (gene-networks) or between genes and some external traits (i.e. clinical).
Authors:
BUS_1.63.0.tar.gz
BUS_1.63.0.zip(r-4.5)BUS_1.63.0.zip(r-4.4)BUS_1.63.0.zip(r-4.3)
BUS_1.63.0.tgz(r-4.4-x86_64)BUS_1.63.0.tgz(r-4.4-arm64)BUS_1.63.0.tgz(r-4.3-x86_64)BUS_1.63.0.tgz(r-4.3-arm64)
BUS_1.63.0.tar.gz(r-4.5-noble)BUS_1.63.0.tar.gz(r-4.4-noble)
BUS_1.63.0.tgz(r-4.4-emscripten)BUS_1.63.0.tgz(r-4.3-emscripten)
BUS.pdf |BUS.html✨
BUS/json (API)
NEWS
# Install 'BUS' in R: |
install.packages('BUS', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
- copasi - Copasi data
- tumors.mRNA - Gene expression data from Human brain tumors
- tumors.miRNA - MiRNA data from Human brain tumors
On BioConductor:BUS-1.63.0(bioc 3.21)BUS-1.62.0(bioc 3.20)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 2 months agofrom:17fe722a5d. Checks:OK: 1 NOTE: 8. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Dec 19 2024 |
R-4.5-win-x86_64 | NOTE | Dec 19 2024 |
R-4.5-linux-x86_64 | NOTE | Dec 19 2024 |
R-4.4-win-x86_64 | NOTE | Dec 19 2024 |
R-4.4-mac-x86_64 | NOTE | Dec 19 2024 |
R-4.4-mac-aarch64 | NOTE | Dec 19 2024 |
R-4.3-win-x86_64 | NOTE | Dec 19 2024 |
R-4.3-mac-x86_64 | NOTE | Dec 19 2024 |
R-4.3-mac-aarch64 | NOTE | Dec 19 2024 |
Exports:BUSgene.pvaluegene.similaritygene.trait.pvaluegene.trait.similaritypred.network
Readme and manuals
Help Manual
Help page | Topics |
---|---|
For network reconstruction. | BUS-package |
A wrapper function for matrices of p-value and predicted network | BUS |
copasi data | copasi |
Calculates p-value for gene-gene interaction | gene.pvalue |
Calculate adjacency matrix for gene-gene interaction | gene.similarity |
Calculate p-value for gene-trait interaction | gene.trait.pvalue |
Calculate similarity for gene-trait interaction | gene.trait.similarity |
Predict the network | pred.network |
miRNA data from Human brain tumors | tumors.miRNA |
Gene expression data from Human brain tumors | tumors.mRNA |