Introduction | BUS Usage
Package: BUS 1.69.0
Yuanhua Liu
BUS: Gene network reconstruction
This package can be used to compute associations among genes (gene-networks) or between genes and some external traits (i.e. clinical).
Authors:
BUS_1.69.0.tar.gz
BUS_1.69.0.zip(r-4.7)BUS_1.69.0.zip(r-4.6)BUS_1.69.0.zip(r-4.5)
BUS_1.69.0.tgz(r-4.6-x86_64)BUS_1.69.0.tgz(r-4.6-arm64)BUS_1.69.0.tgz(r-4.5-x86_64)BUS_1.69.0.tgz(r-4.5-arm64)
BUS_1.69.0.tar.gz(r-4.7-arm64)BUS_1.69.0.tar.gz(r-4.7-x86_64)BUS_1.69.0.tar.gz(r-4.6-arm64)BUS_1.69.0.tar.gz(r-4.6-x86_64)
BUS_1.69.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
BUS/json (API)
| # Install 'BUS' in R: |
| install.packages('BUS', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Datasets:
- copasi - Copasi data
- tumors.miRNA - MiRNA data from Human brain tumors
- tumors.mRNA - Gene expression data from Human brain tumors
On BioConductor:BUS-1.69.0(bioc 3.24)BUS-1.68.0(bioc 3.23)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated from:9eefc798ad. Checks:1 ERROR, 11 NOTE, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | ERROR | 132 | ||
| linux-devel-arm64 | NOTE | 132 | ||
| linux-devel-x86_64 | NOTE | 128 | ||
| source / vignettes | OK | 152 | ||
| linux-release-arm64 | NOTE | 120 | ||
| linux-release-x86_64 | NOTE | 130 | ||
| macos-release-arm64 | NOTE | 73 | ||
| macos-release-x86_64 | NOTE | 220 | ||
| macos-oldrel-arm64 | NOTE | 82 | ||
| macos-oldrel-x86_64 | NOTE | 178 | ||
| windows-devel | NOTE | 80 | ||
| windows-release | NOTE | 85 | ||
| windows-oldrel | NOTE | 74 | ||
| wasm-release | OK | 94 |
Exports:BUSgene.pvaluegene.similaritygene.trait.pvaluegene.trait.similaritypred.network
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| For network reconstruction. | BUS-package |
| A wrapper function for matrices of p-value and predicted network | BUS |
| copasi data | copasi |
| Calculates p-value for gene-gene interaction | gene.pvalue |
| Calculate adjacency matrix for gene-gene interaction | gene.similarity |
| Calculate p-value for gene-trait interaction | gene.trait.pvalue |
| Calculate similarity for gene-trait interaction | gene.trait.similarity |
| Predict the network | pred.network |
| miRNA data from Human brain tumors | tumors.miRNA |
| Gene expression data from Human brain tumors | tumors.mRNA |