Package: BSgenomeForge 1.5.0

Hervé Pagès

BSgenomeForge: Forge BSgenome data packages

A set of tools to forge BSgenome data packages. Supersedes the old seed-based tools from the BSgenome software package. This package allows the user to create a BSgenome data package in one function call, simplifying the old seed-based process.

Authors:Hervé Pagès [aut, cre], Atuhurira Kirabo Kakopo [aut], Emmanuel Chigozie Elendu [ctb], Prisca Chidimma Maduka [ctb]

BSgenomeForge_1.5.0.tar.gz
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BSgenomeForge.pdf |BSgenomeForge.html✨
BSgenomeForge/json (API)
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Bug tracker:https://github.com/bioconductor/bsgenomeforge/issues

On BioConductor:BSgenomeForge-1.5.0(bioc 3.20)BSgenomeForge-1.4.0(bioc 3.19)

bioconductor-package

12 exports 1.38 score 50 dependencies

Last updated 2 months agofrom:46f853199e

Exports:downloadGenomicSequencesFromNCBIdownloadGenomicSequencesFromUCSCfastaTo2bitforgeBSgenomeDataPkgforgeBSgenomeDataPkgFromNCBIforgeBSgenomeDataPkgFromTwobitFileforgeBSgenomeDataPkgFromUCSCforgeMaskedBSgenomeDataPkgforgeMasksFilesforgeSeqFilesforgeSeqlengthsRdaFileforgeSeqlengthsRdsFile

Dependencies:abindaskpassBHBiobaseBiocGenericsBiocIOBiocParallelBiostringsbitopsBSgenomecodetoolscpp11crayoncurlDelayedArrayformatRfutile.loggerfutile.optionsGenomeInfoDbGenomeInfoDbDataGenomicAlignmentsGenomicRangeshttrIRangesjsonlitelambda.rlatticeMatrixMatrixGenericsmatrixStatsmimeopensslR6RCurlrestfulrRhtslibrjsonRsamtoolsrtracklayerS4ArraysS4VectorssnowSparseArraySummarizedExperimentsysUCSC.utilsXMLXVectoryamlzlibbioc