Package: BLMA 1.37.0

Van-Dung Pham

BLMA: BLMA: A package for bi-level meta-analysis

Suit of tools for bi-level meta-analysis. The package can be used in a wide range of applications, including general hypothesis testings, differential expression analysis, functional analysis, and pathway analysis.

Authors:Tin Nguyen <[email protected]>, Hung Nguyen <[email protected]>, and Sorin Draghici <[email protected]>

BLMA_1.37.0.tar.gz
BLMA_1.37.0.zip(r-4.7)BLMA_1.37.0.zip(r-4.6)BLMA_1.37.0.zip(r-4.5)
BLMA_1.37.0.tgz(r-4.6-any)BLMA_1.37.0.tgz(r-4.5-any)
BLMA_1.37.0.tar.gz(r-4.7-any)BLMA_1.37.0.tar.gz(r-4.6-any)
BLMA_1.37.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
BLMA/json (API)
NEWS

# Install 'BLMA' in R:
install.packages('BLMA', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))
Datasets:
  • data_GSE17054 - Gene expression dataset GSE17054 from Majeti et al.
  • data_GSE33223 - Gene expression dataset GSE33223 from Bacher et al.
  • data_GSE42140 - The gene expression dataset GSE42140 obtained from Gene Expression Omnibus
  • data_GSE57194 - Gene expression dataset GSE57194 from Abdul-Nabi et al.
  • group_GSE17054 - Gene expression dataset GSE17054 from Majeti et al.
  • group_GSE33223 - Gene expression dataset GSE33223 from Bacher et al.
  • group_GSE42140 - The gene expression dataset GSE42140 obtained from Gene Expression Omnibus
  • group_GSE57194 - Gene expression dataset GSE57194 from Abdul-Nabi et al.

On BioConductor:BLMA-1.37.0(bioc 3.24)BLMA-1.36.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

genesetenrichmentpathwaysdifferentialexpressionmicroarray

4.01 score 51 scripts 408 downloads 1 mentions 12 exports 65 dependencies

Last updated from:72ed5fbdca. Checks:1 ERROR, 7 NOTE, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksERROR220
linux-devel-x86_64NOTE520
source / vignettesOK466
linux-release-x86_64NOTE487
macos-release-arm64NOTE303
macos-oldrel-arm64NOTE239
windows-develNOTE420
windows-releaseNOTE451
windows-oldrelNOTE456
wasm-releaseOK184

Exports:addCLTbilevelAnalysisClassicbilevelAnalysisGenebilevelAnalysisGenesetbilevelAnalysisPathwayfisherMethodgetStatisticsintraAnalysisClassicintraAnalysisGeneloadKEGGPathwayspORACalcstoufferMethod

Dependencies:AnnotationDbiaskpassBiobaseBiocGenericsBiostringsbitbit64bitopsblobbootcachemclicodetoolscpp11crayoncurlDBIdigestdoRNGfastmapforeachgenericsgluegraphGSAhgu133a.dbhgu133plus2.dbhttrIRangesiteratorsjsonliteKEGGdzPathwaysGEOKEGGgraphKEGGRESTlatticelifecyclelimmamathjaxrMatrixmemoisemetadatmetaformimenlmenumDerivopensslorg.Hs.eg.dbPADOGpbapplypkgconfigpngR6RCurlRgraphvizrlangrngtoolsROntoToolsRSQLiteS4VectorsSeqinfostatmodsysvctrsXMLXVector

BLMA

Rendered fromBLMA.Rnwusingutils::Sweaveon May 29 2026.

Last update: 2020-06-24
Started: 2017-01-17