Package: BLMA 1.31.0

Van-Dung Pham

BLMA: BLMA: A package for bi-level meta-analysis

Suit of tools for bi-level meta-analysis. The package can be used in a wide range of applications, including general hypothesis testings, differential expression analysis, functional analysis, and pathway analysis.

Authors:Tin Nguyen <[email protected]>, Hung Nguyen <[email protected]>, and Sorin Draghici <[email protected]>

BLMA_1.31.0.tar.gz
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BLMA.pdf |BLMA.html✨
BLMA/json (API)
NEWS

# Install 'BLMA' in R:
install.packages('BLMA', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))
Datasets:
  • data_GSE17054 - Gene expression dataset GSE17054 from Majeti et al.
  • data_GSE33223 - Gene expression dataset GSE33223 from Bacher et al.
  • data_GSE42140 - The gene expression dataset GSE42140 obtained from Gene Expression Omnibus
  • data_GSE57194 - Gene expression dataset GSE57194 from Abdul-Nabi et al.
  • group_GSE17054 - Gene expression dataset GSE17054 from Majeti et al.
  • group_GSE33223 - Gene expression dataset GSE33223 from Bacher et al.
  • group_GSE42140 - The gene expression dataset GSE42140 obtained from Gene Expression Omnibus
  • group_GSE57194 - Gene expression dataset GSE57194 from Abdul-Nabi et al.

On BioConductor:BLMA-1.31.0(bioc 3.21)BLMA-1.30.0(bioc 3.20)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

genesetenrichmentpathwaysdifferentialexpressionmicroarray

4.18 score 51 scripts 274 downloads 1 mentions 12 exports 68 dependencies

Last updated 4 months agofrom:3ad7545160. Checks:1 OK, 7 NOTE. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKFeb 13 2025
R-4.5-winNOTEFeb 13 2025
R-4.5-macNOTEFeb 13 2025
R-4.5-linuxNOTEFeb 13 2025
R-4.4-winNOTEFeb 13 2025
R-4.4-macNOTEFeb 13 2025
R-4.3-winNOTEFeb 13 2025
R-4.3-macNOTEFeb 13 2025

Exports:addCLTbilevelAnalysisClassicbilevelAnalysisGenebilevelAnalysisGenesetbilevelAnalysisPathwayfisherMethodgetStatisticsintraAnalysisClassicintraAnalysisGeneloadKEGGPathwayspORACalcstoufferMethod

Dependencies:AnnotationDbiaskpassBiobaseBiocGenericsBiostringsbitbit64bitopsblobbootcachemclicodetoolscpp11crayoncurlDBIdigestdoRNGfastmapforeachgenericsGenomeInfoDbGenomeInfoDbDatagluegraphGSAhgu133a.dbhgu133plus2.dbhttrIRangesiteratorsjsonliteKEGGdzPathwaysGEOKEGGgraphKEGGRESTlatticelifecyclelimmamathjaxrMatrixmemoisemetadatmetaformimenlmenumDerivopensslorg.Hs.eg.dbPADOGpbapplypkgconfigplogrpngR6RCurlRgraphvizrlangrngtoolsROntoToolsRSQLiteS4VectorsstatmodsysUCSC.utilsvctrsXMLXVector

BLMA

Rendered fromBLMA.Rnwusingutils::Sweaveon Feb 13 2025.

Last update: 2020-06-24
Started: 2017-01-17