Package: BLMA 1.31.0

Van-Dung Pham

BLMA: BLMA: A package for bi-level meta-analysis

Suit of tools for bi-level meta-analysis. The package can be used in a wide range of applications, including general hypothesis testings, differential expression analysis, functional analysis, and pathway analysis.

Authors:Tin Nguyen <[email protected]>, Hung Nguyen <[email protected]>, and Sorin Draghici <[email protected]>

BLMA_1.31.0.tar.gz
BLMA_1.31.0.zip(r-4.5)BLMA_1.31.0.zip(r-4.4)BLMA_1.31.0.zip(r-4.3)
BLMA_1.31.0.tgz(r-4.4-any)BLMA_1.31.0.tgz(r-4.3-any)
BLMA_1.31.0.tar.gz(r-4.5-noble)BLMA_1.31.0.tar.gz(r-4.4-noble)
BLMA_1.31.0.tgz(r-4.4-emscripten)BLMA_1.31.0.tgz(r-4.3-emscripten)
BLMA.pdf |BLMA.html✨
BLMA/json (API)
NEWS

# Install 'BLMA' in R:
install.packages('BLMA', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Datasets:
  • data_GSE17054 - Gene expression dataset GSE17054 from Majeti et al.
  • data_GSE33223 - Gene expression dataset GSE33223 from Bacher et al.
  • data_GSE42140 - The gene expression dataset GSE42140 obtained from Gene Expression Omnibus
  • data_GSE57194 - Gene expression dataset GSE57194 from Abdul-Nabi et al.
  • group_GSE17054 - Gene expression dataset GSE17054 from Majeti et al.
  • group_GSE33223 - Gene expression dataset GSE33223 from Bacher et al.
  • group_GSE42140 - The gene expression dataset GSE42140 obtained from Gene Expression Omnibus
  • group_GSE57194 - Gene expression dataset GSE57194 from Abdul-Nabi et al.

On BioConductor:BLMA-1.31.0(bioc 3.21)BLMA-1.30.0(bioc 3.20)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

genesetenrichmentpathwaysdifferentialexpressionmicroarray

4.18 score 51 scripts 240 downloads 1 mentions 12 exports 69 dependencies

Last updated 2 months agofrom:3ad7545160. Checks:OK: 1 NOTE: 6. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 29 2024
R-4.5-winNOTEOct 31 2024
R-4.5-linuxNOTENov 29 2024
R-4.4-winNOTEOct 31 2024
R-4.4-macNOTEOct 31 2024
R-4.3-winNOTEOct 31 2024
R-4.3-macNOTEOct 31 2024

Exports:addCLTbilevelAnalysisClassicbilevelAnalysisGenebilevelAnalysisGenesetbilevelAnalysisPathwayfisherMethodgetStatisticsintraAnalysisClassicintraAnalysisGeneloadKEGGPathwayspORACalcstoufferMethod

Dependencies:AnnotationDbiaskpassBiobaseBiocGenericsBiostringsbitbit64bitopsblobbootcachemclicodetoolscpp11crayoncurlDBIdigestdoRNGfastmapforeachgenericsGenomeInfoDbGenomeInfoDbDatagluegraphGSAhgu133a.dbhgu133plus2.dbhttrIRangesiteratorsjsonliteKEGGdzPathwaysGEOKEGGgraphKEGGRESTlatticelifecyclelimmamathjaxrMatrixmemoisemetadatmetaformimenlmenumDerivopensslorg.Hs.eg.dbPADOGpbapplypkgconfigplogrpngR6RCurlRgraphvizrlangrngtoolsROntoToolsRSQLiteS4VectorsstatmodsysUCSC.utilsvctrsXMLXVectorzlibbioc

BLMA

Rendered fromBLMA.Rnwusingutils::Sweaveon Nov 29 2024.

Last update: 2020-06-24
Started: 2017-01-17