Introduction | BLMA for classical hypothesis testing | BLMA for geneset/pathway analysis | BLMA for differential expression analysis | BLMA for network-based integrative analysis
Package: BLMA 1.37.0
Van-Dung Pham
BLMA: BLMA: A package for bi-level meta-analysis
Suit of tools for bi-level meta-analysis. The package can be used in a wide range of applications, including general hypothesis testings, differential expression analysis, functional analysis, and pathway analysis.
Authors:
BLMA_1.37.0.tar.gz
BLMA_1.37.0.zip(r-4.7)BLMA_1.37.0.zip(r-4.6)BLMA_1.37.0.zip(r-4.5)
BLMA_1.37.0.tgz(r-4.6-any)BLMA_1.37.0.tgz(r-4.5-any)
BLMA_1.37.0.tar.gz(r-4.7-any)BLMA_1.37.0.tar.gz(r-4.6-any)
BLMA_1.37.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
BLMA/json (API)
| # Install 'BLMA' in R: |
| install.packages('BLMA', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Datasets:
- data_GSE17054 - Gene expression dataset GSE17054 from Majeti et al.
- data_GSE33223 - Gene expression dataset GSE33223 from Bacher et al.
- data_GSE42140 - The gene expression dataset GSE42140 obtained from Gene Expression Omnibus
- data_GSE57194 - Gene expression dataset GSE57194 from Abdul-Nabi et al.
- group_GSE17054 - Gene expression dataset GSE17054 from Majeti et al.
- group_GSE33223 - Gene expression dataset GSE33223 from Bacher et al.
- group_GSE42140 - The gene expression dataset GSE42140 obtained from Gene Expression Omnibus
- group_GSE57194 - Gene expression dataset GSE57194 from Abdul-Nabi et al.
On BioConductor:BLMA-1.37.0(bioc 3.24)BLMA-1.36.0(bioc 3.23)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
genesetenrichmentpathwaysdifferentialexpressionmicroarray
Last updated from:72ed5fbdca. Checks:1 ERROR, 7 NOTE, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | ERROR | 238 | ||
| linux-devel-x86_64 | NOTE | 498 | ||
| source / vignettes | OK | 463 | ||
| linux-release-x86_64 | NOTE | 461 | ||
| macos-release-arm64 | NOTE | 269 | ||
| macos-oldrel-arm64 | NOTE | 329 | ||
| windows-devel | NOTE | 413 | ||
| windows-release | NOTE | 410 | ||
| windows-oldrel | NOTE | 407 | ||
| wasm-release | OK | 178 |
Exports:addCLTbilevelAnalysisClassicbilevelAnalysisGenebilevelAnalysisGenesetbilevelAnalysisPathwayfisherMethodgetStatisticsintraAnalysisClassicintraAnalysisGeneloadKEGGPathwayspORACalcstoufferMethod
Dependencies:AnnotationDbiaskpassBiobaseBiocGenericsBiostringsbitbit64bitopsblobbootcachemclicodetoolscpp11crayoncurlDBIdigestdoRNGfastmapforeachgenericsgluegraphGSAhgu133a.dbhgu133plus2.dbhttrIRangesiteratorsjsonliteKEGGdzPathwaysGEOKEGGgraphKEGGRESTlatticelifecyclelimmamathjaxrMatrixmemoisemetadatmetaformimenlmenumDerivopensslorg.Hs.eg.dbPADOGpbapplypkgconfigpngR6RCurlRgraphvizrlangrngtoolsROntoToolsRSQLiteS4VectorsSeqinfostatmodsysvctrsXMLXVector
