Package: BERT 1.3.3
BERT: High Performance Data Integration for Large-Scale Analyses of Incomplete Omic Profiles Using Batch-Effect Reduction Trees (BERT)
Provides efficient batch-effect adjustment of data with missing values. BERT orders all batch effect correction to a tree of pairwise computations. BERT allows parallelization over sub-trees.
Authors:
BERT_1.3.3.tar.gz
BERT_1.3.3.zip(r-4.5)BERT_1.3.3.zip(r-4.4)BERT_1.3.3.zip(r-4.3)
BERT_1.3.3.tgz(r-4.4-any)BERT_1.3.3.tgz(r-4.3-any)
BERT_1.3.3.tar.gz(r-4.5-noble)BERT_1.3.3.tar.gz(r-4.4-noble)
BERT_1.3.3.tgz(r-4.4-emscripten)BERT_1.3.3.tgz(r-4.3-emscripten)
BERT.pdf |BERT.html✨
BERT/json (API)
NEWS
# Install 'BERT' in R: |
install.packages('BERT', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/hsu-hpc/bert/issues
On BioConductor:BERT-1.3.0(bioc 3.21)BERT-1.2.0(bioc 3.20)
batcheffectpreprocessingexperimentaldesignqualitycontrol
Last updated 2 days agofrom:10fd252685. Checks:OK: 1 WARNING: 6. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Nov 21 2024 |
R-4.5-win | WARNING | Nov 21 2024 |
R-4.5-linux | WARNING | Nov 21 2024 |
R-4.4-win | WARNING | Nov 21 2024 |
R-4.4-mac | WARNING | Nov 21 2024 |
R-4.3-win | WARNING | Nov 21 2024 |
R-4.3-mac | WARNING | Nov 21 2024 |
Exports:BERTcompute_aswcount_existinggenerate_data_covariablesgenerate_datasetgenerate_truncated_dataset
Dependencies:abindannotateAnnotationDbiaskpassBHBiobaseBiocGenericsBiocParallelBiostringsbitbit64blobcachemcliclustercodetoolscomprehenrcpp11crayoncurlDBIDelayedArraydplyredgeRfansifastmapforeachformatRfutile.loggerfutile.optionsgenefiltergenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesgluehmshttrinvgammaIRangesiteratorsjanitorjsonliteKEGGRESTlambda.rlatticelifecyclelimmalocfitlogginglubridatemagrittrMatrixMatrixGenericsmatrixStatsmemoisemgcvmimenlmeopensslpillarpkgconfigplogrpngpurrrR6rlangRSQLiteS4ArraysS4VectorssnakecasesnowSparseArraystatmodstringistringrSummarizedExperimentsurvivalsvasystibbletidyrtidyselecttimechangeUCSC.utilsutf8vctrswithrXMLxtableXVectorzlibbioc