Package: BEAT 1.45.0

Kemal Akman

BEAT: BEAT - BS-Seq Epimutation Analysis Toolkit

Model-based analysis of single-cell methylation data

Authors:Kemal Akman <[email protected]>

BEAT_1.45.0.tar.gz
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BEAT.pdf |BEAT.html
BEAT/json (API)

# Install 'BEAT' in R:
install.packages('BEAT', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Datasets:
  • positions - Sample dataset of CpG positions for a single cell BS-seq sample
  • positions.reference - Sample dataset of CpG positions for a reference BS-Seq sample

On BioConductor:BEAT-1.45.0(bioc 3.21)BEAT-1.44.0(bioc 3.20)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

immunooncologygeneticsmethylseqsoftwarednamethylationepigenetics

4.30 score 3 scripts 218 downloads 54 mentions 4 exports 62 dependencies

Last updated 3 months agofrom:72f59ed635. Checks:1 OK, 6 NOTE. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKJan 17 2025
R-4.5-winNOTEJan 17 2025
R-4.5-linuxNOTEJan 17 2025
R-4.4-winNOTEJan 17 2025
R-4.4-macNOTEJan 17 2025
R-4.3-winNOTEJan 17 2025
R-4.3-macNOTEJan 17 2025

Exports:epimutation_callsgenerate_resultsmakeParamspositions_to_regions

Dependencies:abindaskpassBHBiobaseBiocGenericsBiocIOBiocParallelBiostringsbitopsBSgenomecodetoolscpp11crayoncurlDelayedArraydeldirformatRfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomeInfoDbDataGenomicAlignmentsGenomicRangeshttrhwriterinterpIRangesjpegjsonlitelambda.rlatticelatticeExtraMASSMatrixMatrixGenericsmatrixStatsmimeopensslpngpwalignR6RColorBrewerRcppRcppEigenRCurlrestfulrRhtslibrjsonRsamtoolsrtracklayerS4ArraysS4VectorsShortReadsnowSparseArraySummarizedExperimentsysUCSC.utilsXMLXVectoryaml

Analysing single-cell BS-Seq data with the "BEAT" package

Rendered fromBEAT.Rnwusingutils::Sweaveon Jan 17 2025.

Last update: 2014-02-12
Started: 2014-02-12