Package: BASiCStan 1.15.0

Alan OCallaghan

BASiCStan: Stan implementation of BASiCS

Provides an interface to infer the parameters of BASiCS using the variational inference (ADVI), Markov chain Monte Carlo (NUTS), and maximum a posteriori (BFGS) inference engines in the Stan programming language. BASiCS is a Bayesian hierarchical model that uses an adaptive Metropolis within Gibbs sampling scheme. Alternative inference methods provided by Stan may be preferable in some situations, for example for particularly large data or posterior distributions with difficult geometries.

Authors:Alan O'Callaghan [aut, cre], Catalina Vallejos [aut]

BASiCStan_1.15.0.tar.gz
BASiCStan_1.15.0.zip(r-4.7)BASiCStan_1.15.0.zip(r-4.6)BASiCStan_1.15.0.zip(r-4.5)
BASiCStan_1.15.0.tgz(r-4.6-x86_64)BASiCStan_1.15.0.tgz(r-4.6-arm64)BASiCStan_1.15.0.tgz(r-4.5-x86_64)BASiCStan_1.15.0.tgz(r-4.5-arm64)
BASiCStan_1.15.0.tar.gz(r-4.7-arm64)BASiCStan_1.15.0.tar.gz(r-4.7-x86_64)BASiCStan_1.15.0.tar.gz(r-4.6-arm64)BASiCStan_1.15.0.tar.gz(r-4.6-x86_64)
manual.pdf |manual.html✨
card.svg |card.png
BASiCStan/json (API)
NEWS

# Install 'BASiCStan' in R:

install.packages('BASiCStan', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/alanocallaghan/basicstan/issues

Uses libs:

c++– GNU Standard C++ Library v3

On BioConductor:BASiCStan-1.15.0(bioc 3.24)BASiCStan-1.14.0(bioc 3.23)

immunooncology normalization sequencing rnaseq software geneexpression transcriptomics singlecell differentialexpression bayesian cellbiology single-cell-rna-seq cpp

3.78 score 1 scripts 309 downloads 2 exports 145 dependencies

Last updated from:5f51c5f151. Checks:1 NOTE, 11 WARNING, 1 OK, 1 FAIL. Indexed: yes.

Target	Result	Time
bioc-checks	NOTE	329
linux-devel-arm64	WARNING	473
linux-devel-x86_64	WARNING	547
source / vignettes	OK	482
linux-release-arm64	WARNING	454
linux-release-x86_64	WARNING	536
macos-release-arm64	WARNING	268
macos-release-x86_64	WARNING	726
macos-oldrel-arm64	WARNING	282
macos-oldrel-x86_64	WARNING	925
windows-devel	WARNING	608
windows-release	WARNING	615
windows-oldrel	WARNING	573
wasm-release	FAIL	186