Package: BADER 1.43.0

Andreas Neudecker

BADER: Bayesian Analysis of Differential Expression in RNA Sequencing Data

For RNA sequencing count data, BADER fits a Bayesian hierarchical model. The algorithm returns the posterior probability of differential expression for each gene between two groups A and B. The joint posterior distribution of the variables in the model can be returned in the form of posterior samples, which can be used for further down-stream analyses such as gene set enrichment.

Authors:Andreas Neudecker, Matthias Katzfuss

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BADER/json (API)

# Install 'BADER' in R:
install.packages('BADER', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Uses libs:
  • c++– GNU Standard C++ Library v3

On BioConductor:BADER-1.43.0(bioc 3.20)BADER-1.42.0(bioc 3.19)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

bioconductor-package

1 exports 1.75 score 0 dependencies 4 mentions 21 downloads

Last updated 2 months agofrom:9117e5ebc7

Exports:BADER

Dependencies:

Analysing RNA-Seq data with the "BADER" package

Rendered fromBADER.Rnwusingutils::Sweaveon Jul 03 2024.

Last update: 2013-09-17
Started: 2013-09-17