Package: BADER 1.51.0
Andreas Neudecker
BADER: Bayesian Analysis of Differential Expression in RNA Sequencing Data
For RNA sequencing count data, BADER fits a Bayesian hierarchical model. The algorithm returns the posterior probability of differential expression for each gene between two groups A and B. The joint posterior distribution of the variables in the model can be returned in the form of posterior samples, which can be used for further down-stream analyses such as gene set enrichment.
Authors:
BADER_1.51.0.tar.gz
BADER_1.51.0.zip(r-4.7)BADER_1.51.0.zip(r-4.6)BADER_1.51.0.zip(r-4.5)
BADER_1.51.0.tgz(r-4.6-x86_64)BADER_1.51.0.tgz(r-4.6-arm64)BADER_1.51.0.tgz(r-4.5-x86_64)BADER_1.51.0.tgz(r-4.5-arm64)
BADER_1.51.0.tar.gz(r-4.7-arm64)BADER_1.51.0.tar.gz(r-4.7-x86_64)BADER_1.51.0.tar.gz(r-4.6-arm64)BADER_1.51.0.tar.gz(r-4.6-x86_64)
BADER_1.51.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
BADER/json (API)
| # Install 'BADER' in R: |
| install.packages('BADER', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:BADER-1.51.0(bioc 3.24)BADER-1.50.0(bioc 3.23)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
immunooncologysequencingrnaseqdifferentialexpressionsoftwaresagecpp
Last updated from:43839d2662. Checks:1 ERROR, 11 NOTE, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | ERROR | 180 | ||
| linux-devel-arm64 | NOTE | 177 | ||
| linux-devel-x86_64 | NOTE | 223 | ||
| source / vignettes | OK | 215 | ||
| linux-release-arm64 | NOTE | 170 | ||
| linux-release-x86_64 | NOTE | 162 | ||
| macos-release-arm64 | NOTE | 125 | ||
| macos-release-x86_64 | NOTE | 320 | ||
| macos-oldrel-arm64 | NOTE | 124 | ||
| macos-oldrel-x86_64 | NOTE | 223 | ||
| windows-devel | NOTE | 1214 | ||
| windows-release | NOTE | 1345 | ||
| windows-oldrel | NOTE | 1159 | ||
| wasm-release | OK | 186 |
Exports:BADER
Dependencies:
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Bayesian Analysis of RNA Sequencing Data | BADER |