Package: Anaquin 2.29.0
Anaquin: Statistical analysis of sequins
The project is intended to support the use of sequins (synthetic sequencing spike-in controls) owned and made available by the Garvan Institute of Medical Research. The goal is to provide a standard open source library for quantitative analysis, modelling and visualization of spike-in controls.
Authors:
Anaquin_2.29.0.tar.gz
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Anaquin_2.29.0.tgz(r-4.4-any)Anaquin_2.29.0.tgz(r-4.3-any)
Anaquin_2.29.0.tar.gz(r-4.5-noble)Anaquin_2.29.0.tar.gz(r-4.4-noble)
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Anaquin.pdf |Anaquin.html✨
Anaquin/json (API)
NEWS
# Install 'Anaquin' in R: |
install.packages('Anaquin', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/student-t/ranaquin/issues
- RnaQuinGeneMixture - RnaQuin mixture
- RnaQuinIsoformMixture - RnaQuin mixture
- UserGuideData_5.4.5.1 - Section 5.4.5.1 Assembly Dataset
- UserGuideData_5.4.6.3 - Gene expression
- UserGuideData_5.6.3 - Differential expression
On BioConductor:Anaquin-2.29.0(bioc 3.20)Anaquin-2.28.0(bioc 3.19)
Last updated 2 months agofrom:c65f43ccd1
Exports:plotConjointplotLinearplotLODplotLogisticplotROC
Dependencies:abindaskpassBHBiobaseBiocGenericsBiocParallelbitopscaToolsclicodetoolscolorspacecpp11crayoncurlDelayedArrayDESeq2evaluatefansifarverformatRfutile.loggerfutile.optionsGenomeInfoDbGenomeInfoDbDataGenomicRangesggplot2gluegplotsgtablegtoolshighrhttrIRangesisobandjsonliteKernSmoothknitrlabelinglambda.rlatticelifecyclelocfitmagrittrMASSMatrixMatrixGenericsmatrixStatsmgcvmimemunsellnlmeopensslpillarpkgconfigplyrqvalueR6RColorBrewerRcppRcppArmadilloreshape2rlangROCRS4ArraysS4VectorsscalessnowSparseArraystringistringrSummarizedExperimentsystibbleUCSC.utilsutf8vctrsviridisLitewithrxfunXVectoryamlzlibbioc
Readme and manuals
Help Manual
Help page | Topics |
---|---|
Create conjoint plots | plotConjoint |
Plot linear model for sequins | plotLinear |
Create Limit-of-Detection Ratio (LOD) plot | plotLOD |
Plot logistic model for sequins | plotLogistic |
Create ROC plot | plotROC |
RnaQuin mixture (gene level) | RnaQuinGeneMixture |
RnaQuin mixture (isoform level) | RnaQuinIsoformMixture |
Section 5.4.5.1 Assembly Dataset | UserGuideData_5.4.5.1 |
Gene expression (RnaQuin) | UserGuideData_5.4.6.3 |
Differential expression (RnaQuin) | UserGuideData_5.6.3 |