Package: AnVIL 1.25.1

Marcel Ramos

AnVIL: Bioconductor on the AnVIL compute environment

The AnVIL is a cloud computing resource developed in part by the National Human Genome Research Institute. The AnVIL package provides programatic access to the Dockstore, Leonardo, Rawls, TDR, and Terra RESTful programming interfaces. For platform-specific user-level functionality, see either the AnVILGCP or AnVILAz package.

Authors:Marcel Ramos [aut, cre], Martin Morgan [aut], Kayla Interdonato [aut], Yubo Cheng [aut], Nitesh Turaga [aut], BJ Stubbs [ctb], Vincent Carey [ctb], Sehyun Oh [ctb], Sweta Gopaulakrishnan [ctb], Valerie Obenchain [ctb]

AnVIL_1.25.1.tar.gz
AnVIL_1.25.1.zip(r-4.7)AnVIL_1.25.1.zip(r-4.6)AnVIL_1.25.1.zip(r-4.5)
AnVIL_1.25.1.tgz(r-4.6-any)AnVIL_1.25.1.tgz(r-4.5-any)
AnVIL_1.25.1.tar.gz(r-4.7-any)AnVIL_1.25.1.tar.gz(r-4.6-any)
AnVIL_1.25.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
AnVIL/json (API)
NEWS

# Install 'AnVIL' in R:
install.packages('AnVIL', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/bioconductor/anvil/issues

On BioConductor:AnVIL-1.25.1(bioc 3.24)AnVIL-1.24.0(bioc 3.23)

infrastructureu24hg010263

10.57 score 7 stars 12 packages 317 scripts 1.2k downloads 2 mentions 23 exports 71 dependencies

Last updated from:92bbfe0fc0. Checks:1 NOTE, 9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksNOTE175
linux-devel-x86_64OK201
source / vignettesOK201
linux-release-x86_64OK189
macos-release-arm64OK103
macos-oldrel-arm64OK108
windows-develOK96
windows-releaseOK95
windows-oldrelOK115
wasm-releaseOK143

Exports:.Dockstore.gadget_run.Leonardo.Rawls.Service.Terraadd_libpathsanvil_set_auth_jsonavtable_gadgetavworkflow_gadgetavworkspace_gadgetbrowse_workspaceDockstoreempty_objectLeonardooperationsRawlsschemasServiceshowtagsTDRTerra

Dependencies:AnVILBaseaskpassbase64encBiocBaseUtilsbslibcachemclicommonmarkcpp11crosstalkcurldigestdplyrDTevaluatefastmapfilelockfontawesomeformatRfsfutile.loggerfutile.optionsGCPtoolsgenericsgluehighrhtmltoolshtmlwidgetshttpuvhttrhttr2jquerylibjsonlitekeyringknitrlambda.rlaterlazyevallifecyclemagrittrmemoisemimeminiUIopensslotelpillarpkgconfigpromisespurrrR6rapiclientrappdirsRcpprlangrmarkdownsassshinysourcetoolsstringistringrsystibbletidyrtidyselecttinytexutf8vctrswithrxfunxtableyaml

Dockstore and Bioconductor for AnVIL

BJ Stubbs, S Gopaulakrishnan, Nitesh Truaga, Martin Morgan, Vincent Carey

Rendered fromBiocDockstore.Rmdusingknitr::rmarkdownon Jun 03 2026.

Last update: 2025-12-09
Started: 2020-04-25

Introduction to the AnVIL package

Nitesh Turaga, Vincent Carey, BJ Stubbs, Marcel Ramos, Martin Morgan

Rendered fromIntroduction.Rmdusingknitr::rmarkdownon Jun 03 2026.

Last update: 2026-05-04
Started: 2020-04-25

Running an AnVIL workflow within R

Kayla Interdonato, Yubo Cheng, Martin Morgan

Rendered fromRunningWorkflow.Rmdusingknitr::rmarkdownon Jun 03 2026.

Last update: 2025-12-09
Started: 2022-01-19

Readme and manuals

Help Manual

Help pageTopics
Functions to implement AnVIL gadget interfaces.gadget_run
Store and retrieve authentication credentials using a secure keyringanvil_set_auth_json
Graphical user interfaces for common AnVIL operationsavtable_gadget avworkflow_gadget avworkspace_gadget browse_workspace
RESTful service constructorService
RESTful services useful for AnVIL developers$,Service-method .DollarNames.Service Dockstore Dockstore-class empty_object Leonardo Leonardo-class operations operations,Dockstore-method operations,Leonardo-method operations,Rawls-method operations,Service-method operations,TDR-method operations,Terra-method Rawls Rawls-class schemas schemas,Rawls-method schemas,Service-method schemas,Terra-method Service-class Services show,Service-method tags TDR TDR-class Terra Terra-class
Utilities for managing library pathsadd_libpaths utilities