Package: AlphaBeta 1.21.0

Yadollah Shahryary Dizaji

AlphaBeta: Computational inference of epimutation rates and spectra from high-throughput DNA methylation data in plants

AlphaBeta is a computational method for estimating epimutation rates and spectra from high-throughput DNA methylation data in plants. The method has been specifically designed to: 1. analyze 'germline' epimutations in the context of multi-generational mutation accumulation lines (MA-lines). 2. analyze 'somatic' epimutations in the context of plant development and aging.

Authors:Yadollah Shahryary Dizaji [cre, aut], Frank Johannes [aut], Rashmi Hazarika [aut]

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AlphaBeta.pdf |AlphaBeta.html✨
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NEWS

# Install 'AlphaBeta' in R:
install.packages('AlphaBeta', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

On BioConductor:AlphaBeta-1.19.0(bioc 3.20)AlphaBeta-1.18.0(bioc 3.19)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

epigeneticsfunctionalgenomicsgeneticsmathematicalbiology

4.00 score 8 scripts 252 downloads 14 exports 85 dependencies

Last updated 25 days agofrom:3bef2e90e0. Checks:OK: 1 NOTE: 6. Indexed: yes.

TargetResultDate
Doc / VignettesOKOct 30 2024
R-4.5-winNOTEOct 30 2024
R-4.5-linuxNOTEOct 30 2024
R-4.4-winNOTEOct 30 2024
R-4.4-macNOTEOct 30 2024
R-4.3-winNOTEOct 30 2024
R-4.3-macNOTEOct 30 2024

Exports:ABneutralABneutralSOMAABnullABplotABselectMMABselectMMSOMAABselectUUABselectUUSOMABOOTmodelbuildPedigreedMatrixFtestRSSplotPedigreerc.meth.lvl

Dependencies:askpassbase64encBHBiocParallelbslibcachemclicodetoolscolorspacecpp11crosstalkcurldata.tabledigestdplyrevaluateexpmfansifarverfastmapfontawesomeformatRfsfutile.loggerfutile.optionsgenericsggplot2gluegtablegtoolshighrhtmltoolshtmlwidgetshttrigraphisobandjquerylibjsonliteknitrlabelinglambda.rlaterlatticelazyevallifecyclemagrittrMASSMatrixmemoisemgcvmimemunsellnlmenloptrnumDerivopenssloptimxpillarpkgconfigplotlypracmapromisespurrrR6rappdirsRColorBrewerRcpprlangrmarkdownsassscalessnowstringistringrsystibbletidyrtidyselecttinytexutf8vctrsviridisLitewithrxfunyaml

AlphaBeta

Y.Shahryary, Rashmi Hazarika, Frank Johannes

Rendered fromAlphaBeta.Rmdusingknitr::rmarkdownon Oct 30 2024.

Last update: 2020-04-26
Started: 2019-07-17