Package: AlphaBeta 1.27.0

Yadollah Shahryary Dizaji

AlphaBeta: Computational inference of epimutation rates and spectra from high-throughput DNA methylation data in plants

AlphaBeta is a computational method for estimating epimutation rates and spectra from high-throughput DNA methylation data in plants. The method has been specifically designed to: 1. analyze 'germline' epimutations in the context of multi-generational mutation accumulation lines (MA-lines). 2. analyze 'somatic' epimutations in the context of plant development and aging.

Authors:Yadollah Shahryary Dizaji [cre, aut], Frank Johannes [aut], Rashmi Hazarika [aut]

AlphaBeta_1.27.0.tar.gz
AlphaBeta_1.27.0.zip(r-4.7)AlphaBeta_1.27.0.zip(r-4.6)AlphaBeta_1.27.0.zip(r-4.5)
AlphaBeta_1.27.0.tgz(r-4.6-any)AlphaBeta_1.27.0.tgz(r-4.5-any)
AlphaBeta_1.27.0.tar.gz(r-4.7-any)AlphaBeta_1.27.0.tar.gz(r-4.6-any)
AlphaBeta_1.27.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
AlphaBeta/json (API)
NEWS

# Install 'AlphaBeta' in R:
install.packages('AlphaBeta', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

On BioConductor:AlphaBeta-1.27.0(bioc 3.24)AlphaBeta-1.26.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

epigeneticsfunctionalgenomicsgeneticsmathematicalbiology

4.15 score 8 scripts 441 downloads 7 mentions 14 exports 81 dependencies

Last updated from:d6e792015f. Checks:8 NOTE, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksNOTE163
linux-devel-x86_64NOTE456
source / vignettesOK553
linux-release-x86_64NOTE464
macos-release-arm64NOTE288
macos-oldrel-arm64NOTE463
windows-develNOTE404
windows-releaseNOTE386
windows-oldrelNOTE458
wasm-releaseOK149

Exports:ABneutralABneutralSOMAABnullABplotABselectMMABselectMMSOMAABselectUUABselectUUSOMABOOTmodelbuildPedigreedMatrixFtestRSSplotPedigreerc.meth.lvl

Dependencies:askpassbase64encBHBiocParallelbslibcachemclicodetoolscpp11crosstalkcurldata.tabledigestdplyrevaluateexpmfarverfastmapfontawesomeformatRfsfutile.loggerfutile.optionsgenericsggplot2gluegtablegtoolshighrhtmltoolshtmlwidgetshttrigraphisobandjquerylibjsonliteknitrlabelinglambda.rlaterlatticelazyevallifecyclemagrittrMatrixmemoisemimenloptrnumDerivopenssloptimxotelpillarpkgconfigplotlypracmapromisespurrrR6rappdirsRColorBrewerRcpprlangrmarkdownS7sassscalessnowstringistringrsystibbletidyrtidyselecttinytexutf8vctrsviridisLitewithrxfunyaml

AlphaBeta

Y.Shahryary, Rashmi Hazarika, Frank Johannes

Rendered fromAlphaBeta.Rmdusingknitr::rmarkdownon Jun 08 2026.

Last update: 2020-04-26
Started: 2019-07-17