Introduction | Getting started | Methods | Data | Examples
Package: ASEB 1.57.0
Likun Wang
ASEB: Predict Acetylated Lysine Sites
ASEB is an R package to predict lysine sites that can be acetylated by a specific KAT-family.
Authors:
ASEB_1.57.0.tar.gz
ASEB_1.57.0.zip(r-4.7)ASEB_1.57.0.zip(r-4.6)ASEB_1.57.0.zip(r-4.5)
ASEB_1.57.0.tgz(r-4.6-x86_64)ASEB_1.57.0.tgz(r-4.6-arm64)ASEB_1.57.0.tgz(r-4.5-x86_64)ASEB_1.57.0.tgz(r-4.5-arm64)
ASEB_1.57.0.tar.gz(r-4.7-arm64)ASEB_1.57.0.tar.gz(r-4.7-x86_64)ASEB_1.57.0.tar.gz(r-4.6-arm64)ASEB_1.57.0.tar.gz(r-4.6-x86_64)
ASEB_1.57.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
ASEB/json (API)
| # Install 'ASEB' in R: |
| install.packages('ASEB', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:ASEB-1.57.0(bioc 3.24)ASEB-1.56.0(bioc 3.23)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated from:d3a518352b. Checks:1 ERROR, 7 NOTE, 2 OK, 4 WARNING. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | ERROR | 139 | ||
| linux-devel-arm64 | NOTE | 123 | ||
| linux-devel-x86_64 | NOTE | 129 | ||
| source / vignettes | OK | 123 | ||
| linux-release-arm64 | NOTE | 120 | ||
| linux-release-x86_64 | NOTE | 154 | ||
| macos-release-arm64 | WARNING | 80 | ||
| macos-release-x86_64 | WARNING | 166 | ||
| macos-oldrel-arm64 | WARNING | 78 | ||
| macos-oldrel-x86_64 | WARNING | 168 | ||
| windows-devel | NOTE | 78 | ||
| windows-release | NOTE | 85 | ||
| windows-oldrel | NOTE | 80 | ||
| wasm-release | OK | 88 |
Exports:asebProteinsasebSitesdrawEScurvedrawStatreadSequenceSequenceInfo
Dependencies:
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| prediction of all lysine sites on a specific protein that can be acetylated | asebProteins asebProteins,character,character,character-method asebProteins,SequenceInfo,SequenceInfo,SequenceInfo-method |
| prediction of lysine sites that can be acetylated | asebSites asebSites,character,character,character-method asebSites,SequenceInfo,SequenceInfo,SequenceInfo-method |
| draw Enriment Score curves for specific sites | drawEScurve drawEScurve,data.frame-method |
| draw P-values and enrichment scores for all lysine sites on a specific protein | drawStat drawStat,data.frame-method |
| read sequences from file | readSequence |
| "SequenceInfo" class | SequenceInfo |