Package: ASAFE 1.33.0

Qian Zhang

ASAFE: Ancestry Specific Allele Frequency Estimation

Given admixed individuals' bi-allelic SNP genotypes and ancestry pairs (where each ancestry can take one of three values) for multiple SNPs, perform an EM algorithm to deal with the fact that SNP genotypes are unphased with respect to ancestry pairs, in order to estimate ancestry-specific allele frequencies for all SNPs.

Authors:Qian Zhang <[email protected]>

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ASAFE.pdf |ASAFE.html✨
ASAFE/json (API)
NEWS

# Install 'ASAFE' in R:
install.packages('ASAFE', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))
Datasets:

On BioConductor:ASAFE-1.33.0(bioc 3.21)ASAFE-1.32.0(bioc 3.20)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

snpgenomewideassociationlinkagedisequilibriumbiomedicalinformaticsgeneticsexperimentaldesign

3.60 score 2 scripts 324 downloads 2 mentions 2 exports 0 dependencies

Last updated 5 months agofrom:b28315bc7c. Checks:9 OK. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKMar 17 2025
R-4.5-winOKMar 17 2025
R-4.5-macOKMar 17 2025
R-4.5-linuxOKMar 17 2025
R-4.4-winOKMar 17 2025
R-4.4-macOKMar 17 2025
R-4.4-linuxOKMar 17 2025
R-4.3-winOKMar 17 2025
R-4.3-macOKMar 17 2025

Exports:algorithm_1snpalgorithm_1snp_wrapper

Dependencies:

ASAFE (Ancestry Specific Allele Frequency Estimation)

Qian Zhang

Rendered fromASAFE.Rmdusingknitr::rmarkdownon Mar 17 2025.

Last update: 2016-07-14
Started: 2016-07-14