Package: ASAFE 1.39.0

Qian Zhang

ASAFE: Ancestry Specific Allele Frequency Estimation

Given admixed individuals' bi-allelic SNP genotypes and ancestry pairs (where each ancestry can take one of three values) for multiple SNPs, perform an EM algorithm to deal with the fact that SNP genotypes are unphased with respect to ancestry pairs, in order to estimate ancestry-specific allele frequencies for all SNPs.

Authors:Qian Zhang <[email protected]>

ASAFE_1.39.0.tar.gz
ASAFE_1.39.0.zip(r-4.7)ASAFE_1.39.0.zip(r-4.6)ASAFE_1.39.0.zip(r-4.5)
ASAFE_1.39.0.tgz(r-4.6-any)ASAFE_1.39.0.tgz(r-4.5-any)
ASAFE_1.39.0.tar.gz(r-4.7-any)ASAFE_1.39.0.tar.gz(r-4.6-any)
ASAFE_1.39.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
ASAFE/json (API)
NEWS

# Install 'ASAFE' in R:
install.packages('ASAFE', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))
Datasets:

On BioConductor:ASAFE-1.39.0(bioc 3.24)ASAFE-1.38.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

snpgenomewideassociationlinkagedisequilibriumbiomedicalinformaticsgeneticsexperimentaldesign

3.60 score 4 scripts 371 downloads 2 mentions 2 exports 0 dependencies

Last updated from:1324a93673. Checks:1 ERROR, 9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksERROR162
linux-devel-x86_64OK242
source / vignettesOK196
linux-release-x86_64OK167
macos-release-arm64OK89
macos-oldrel-arm64OK92
windows-develOK78
windows-releaseOK66
windows-oldrelOK93
wasm-releaseOK79

Exports:algorithm_1snpalgorithm_1snp_wrapper

Dependencies:

ASAFE (Ancestry Specific Allele Frequency Estimation)

Qian Zhang

Rendered fromASAFE.Rmdusingknitr::rmarkdownon May 15 2026.

Last update: 2016-07-14
Started: 2016-07-14