Package: ASAFE 1.33.0

Qian Zhang

ASAFE: Ancestry Specific Allele Frequency Estimation

Given admixed individuals' bi-allelic SNP genotypes and ancestry pairs (where each ancestry can take one of three values) for multiple SNPs, perform an EM algorithm to deal with the fact that SNP genotypes are unphased with respect to ancestry pairs, in order to estimate ancestry-specific allele frequencies for all SNPs.

Authors:Qian Zhang <[email protected]>

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ASAFE.pdf |ASAFE.html✨
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NEWS

# Install 'ASAFE' in R:
install.packages('ASAFE', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Datasets:

On BioConductor:ASAFE-1.33.0(bioc 3.21)ASAFE-1.32.0(bioc 3.20)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

snpgenomewideassociationlinkagedisequilibriumbiomedicalinformaticsgeneticsexperimentaldesign

3.60 score 2 scripts 284 downloads 2 mentions 2 exports 0 dependencies

Last updated 2 months agofrom:b28315bc7c. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKDec 17 2024
R-4.5-winOKDec 17 2024
R-4.5-linuxOKDec 17 2024
R-4.4-winOKDec 17 2024
R-4.4-macOKDec 17 2024
R-4.3-winOKDec 17 2024
R-4.3-macOKDec 17 2024

Exports:algorithm_1snpalgorithm_1snp_wrapper

Dependencies:

ASAFE (Ancestry Specific Allele Frequency Estimation)

Qian Zhang

Rendered fromASAFE.Rmdusingknitr::rmarkdownon Dec 17 2024.

Last update: 2016-07-14
Started: 2016-07-14