Package: ASAFE 1.33.0

Qian Zhang

ASAFE: Ancestry Specific Allele Frequency Estimation

Given admixed individuals' bi-allelic SNP genotypes and ancestry pairs (where each ancestry can take one of three values) for multiple SNPs, perform an EM algorithm to deal with the fact that SNP genotypes are unphased with respect to ancestry pairs, in order to estimate ancestry-specific allele frequencies for all SNPs.

Authors:Qian Zhang <[email protected]>

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ASAFE.pdf |ASAFE.html✨
ASAFE/json (API)
NEWS

# Install 'ASAFE' in R:
install.packages('ASAFE', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))
Datasets:

On BioConductor:ASAFE-1.33.0(bioc 3.21)ASAFE-1.32.0(bioc 3.20)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

snpgenomewideassociationlinkagedisequilibriumbiomedicalinformaticsgeneticsexperimentaldesign

3.60 score 2 scripts 322 downloads 2 mentions 2 exports 0 dependencies

Last updated 4 months agofrom:b28315bc7c. Checks:8 OK. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKFeb 15 2025
R-4.5-winOKFeb 15 2025
R-4.5-macOKFeb 15 2025
R-4.5-linuxOKFeb 15 2025
R-4.4-winOKFeb 15 2025
R-4.4-macOKFeb 15 2025
R-4.3-winOKFeb 15 2025
R-4.3-macOKFeb 15 2025

Exports:algorithm_1snpalgorithm_1snp_wrapper

Dependencies:

ASAFE (Ancestry Specific Allele Frequency Estimation)

Qian Zhang

Rendered fromASAFE.Rmdusingknitr::rmarkdownon Feb 15 2025.

Last update: 2016-07-14
Started: 2016-07-14