Package: ADAMgui 1.21.0

Jose Luiz Rybarczyk Filho

ADAMgui: Activity and Diversity Analysis Module Graphical User Interface

ADAMgui is a Graphical User Interface for the ADAM package. The ADAMgui package provides 2 shiny-based applications that allows the user to study the output of the ADAM package files through different plots. It's possible, for example, to choose a specific GFAG and observe the gene expression behavior with the plots created with the GFAGtargetUi function. Features such as differential expression and foldchange can be easily seen with aid of the plots made with GFAGpathUi function.

Authors:Giordano Bruno Sanches Seco [aut], André Luiz Molan [ctb], Agnes Takeda [ctb], Jose Rybarczyk Filho [ctb, cre, ths]

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ADAMgui.pdf |ADAMgui.html✨
ADAMgui/json (API)
NEWS

# Install 'ADAMgui' in R:

install.packages('ADAMgui', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/jrybarczyk/adamgui/issues

Datasets:

DiffAedes - Aedes aegypti RNA-seq differential expression data example
GeneFunctionAedes - Relation between Aedes aegypti genes and KEGG pathways
ResultAnalysisAedes - Result from an example of ADAM Aedes aegypti analysis

On BioConductor:ADAMgui-1.21.0(bioc 3.20)ADAMgui-1.20.0(bioc 3.19)

bioconductor-package

2 exports 0.61 score 149 dependencies

Last updated 2 months agofrom:665a4c8878

Exports:GFAGpathUi GFAGtargetUi

Dependencies:abind ADAM AnnotationDbi askpass backports base64enc Biobase BiocGenerics Biostrings bit bit64 blob boot brio broom bslib cachem callr car carData cli colorRamps colorspace commonmark corrplot cowplot cpp11 crayon crosstalk curl data.table DBI DelayedArray desc diffobj digest dplyr DT evaluate fansi farver fastmap fontawesome fs generics GenomeInfoDb GenomeInfoDbData GenomicRanges ggplot2 ggpubr ggrepel ggsci ggsignif glue GO.db gridExtra gtable highr htmltools htmlwidgets httpuv httr IRanges isoband jquerylib jsonlite KEGGREST knitr labeling later lattice lazyeval lifecycle lme4 magrittr MASS Matrix MatrixGenerics MatrixModels matrixStats memoise mgcv mime minqa munsell nlme nloptr nnet numDeriv openssl pbapply pbkrtest pillar pkgbuild pkgconfig pkgload plogr plyr png polynom praise processx promises ps purrr quantreg R6 rappdirs RColorBrewer Rcpp RcppEigen rematch2 reshape2 rlang rmarkdown rprojroot RSQLite rstatix S4Arrays S4Vectors sass scales shiny shinyjs sourcetools SparseArray SparseM stringi stringr SummarizedExperiment survival sys testthat tibble tidyr tidyselect tinytex UCSC.utils utf8 varhandle vctrs viridisLite waldo withr xfun xtable XVector yaml zlibbioc

ADAMgui: Activity and Diversity Analysis Module Graphical User Interface

Giordano B. S. Seco, André L. Molan, Agnes A. S. Takeda, Jose L. Rybarczyk-Filho

Rendered fromADAMgui.Rmdusingknitr::knitron Jun 25 2024.

Last update: 2021-09-01
Started: 2019-02-06

Help page	Topics
Aedes aegypti RNA-seq differential expression data example	DiffAedes
Relation between Aedes aegypti genes and KEGG pathways	GeneFunctionAedes
GFAGpathUi	GFAGpathUi
GFAGtargetUi	GFAGtargetUi
Result from an example of ADAM Aedes aegypti analysis	ResultAnalysisAedes

Package: ADAMgui 1.21.0

ADAMgui: Activity and Diversity Analysis Module Graphical User Interface

ADAMgui: Activity and Diversity Analysis Module Graphical User Interface

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