Package: ADAMgui 1.23.0
Jose Luiz Rybarczyk Filho
ADAMgui: Activity and Diversity Analysis Module Graphical User Interface
ADAMgui is a Graphical User Interface for the ADAM package. The ADAMgui package provides 2 shiny-based applications that allows the user to study the output of the ADAM package files through different plots. It's possible, for example, to choose a specific GFAG and observe the gene expression behavior with the plots created with the GFAGtargetUi function. Features such as differential expression and foldchange can be easily seen with aid of the plots made with GFAGpathUi function.
Authors:
ADAMgui_1.23.0.tar.gz
ADAMgui_1.23.0.zip(r-4.5)ADAMgui_1.23.0.zip(r-4.4)ADAMgui_1.23.0.zip(r-4.3)
ADAMgui_1.23.0.tgz(r-4.5-any)ADAMgui_1.23.0.tgz(r-4.4-any)ADAMgui_1.23.0.tgz(r-4.3-any)
ADAMgui_1.23.0.tar.gz(r-4.5-noble)ADAMgui_1.23.0.tar.gz(r-4.4-noble)
ADAMgui_1.23.0.tgz(r-4.4-emscripten)ADAMgui_1.23.0.tgz(r-4.3-emscripten)
ADAMgui.pdf |ADAMgui.html✨
ADAMgui/json (API)
NEWS
| # Install 'ADAMgui' in R: |
| install.packages('ADAMgui', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/jrybarczyk/adamgui/issues
- DiffAedes - Aedes aegypti RNA-seq differential expression data example
- GeneFunctionAedes - Relation between Aedes aegypti genes and KEGG pathways
- ResultAnalysisAedes - Result from an example of ADAM Aedes aegypti analysis
On BioConductor:ADAMgui-1.23.0(bioc 3.21)ADAMgui-1.22.0(bioc 3.20)
Last updated 4 months agofrom:9cd8b2c078. Checks:1 OK, 6 NOTE, 1 WARNING. Indexed: yes.
| Target | Result | Latest binary |
|---|---|---|
| Doc / Vignettes | OK | Jan 28 2025 |
| R-4.5-win | NOTE | Jan 28 2025 |
| R-4.5-mac | WARNING | Jan 28 2025 |
| R-4.5-linux | NOTE | Jan 28 2025 |
| R-4.4-win | NOTE | Jan 28 2025 |
| R-4.4-mac | NOTE | Jan 28 2025 |
| R-4.3-win | NOTE | Jan 28 2025 |
| R-4.3-mac | NOTE | Jan 28 2025 |
Exports:GFAGpathUiGFAGtargetUi
Dependencies:abindADAMAnnotationDbiaskpassbackportsbase64encBiobaseBiocGenericsBiostringsbitbit64blobbootbriobroombslibcachemcallrcarcarDataclicolorRampscolorspacecommonmarkcorrplotcowplotcpp11crayoncrosstalkcurldata.tableDBIDelayedArrayDerivdescdiffobjdigestdoBydplyrDTevaluatefansifarverfastmapfontawesomeFormulafsgenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesggplot2ggpubrggrepelggsciggsignifglueGO.dbgridExtragtablehighrhtmltoolshtmlwidgetshttpuvhttrIRangesisobandjquerylibjsonliteKEGGRESTknitrlabelinglaterlatticelazyevallifecyclelme4magrittrMASSMatrixMatrixGenericsMatrixModelsmatrixStatsmemoisemgcvmicrobenchmarkmimeminqamodelrmunsellnlmenloptrnnetnumDerivopensslpbapplypbkrtestpillarpkgbuildpkgconfigpkgloadplogrplyrpngpolynompraiseprocessxpromisespspurrrquantregR6rappdirsrbibutilsRColorBrewerRcppRcppEigenRdpackreformulasreshape2rlangrmarkdownrprojrootRSQLiterstatixS4ArraysS4VectorssassscalesshinyshinyjssourcetoolsSparseArraySparseMstringistringrSummarizedExperimentsurvivalsystestthattibbletidyrtidyselecttinytexUCSC.utilsutf8varhandlevctrsviridisLitewaldowithrxfunxtableXVectoryaml
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Aedes aegypti RNA-seq differential expression data example | DiffAedes |
| Relation between Aedes aegypti genes and KEGG pathways | GeneFunctionAedes |
| GFAGpathUi | GFAGpathUi |
| GFAGtargetUi | GFAGtargetUi |
| Result from an example of ADAM Aedes aegypti analysis | ResultAnalysisAedes |
