Overview | Package Download and Installation | Graphical User Interface (GUI) | GFAG Path Viewer Function: GFAGpathUi() | GFAG Target Viewer Function: GFAGtargetUi() | Session Info | References
Package: ADAMgui 1.29.0
Jose Luiz Rybarczyk Filho
ADAMgui: Activity and Diversity Analysis Module Graphical User Interface
ADAMgui is a Graphical User Interface for the ADAM package. The ADAMgui package provides 2 shiny-based applications that allows the user to study the output of the ADAM package files through different plots. It's possible, for example, to choose a specific GFAG and observe the gene expression behavior with the plots created with the GFAGtargetUi function. Features such as differential expression and foldchange can be easily seen with aid of the plots made with GFAGpathUi function.
Authors:
ADAMgui_1.29.0.tar.gz
ADAMgui_1.29.0.zip(r-4.7)ADAMgui_1.29.0.zip(r-4.6)ADAMgui_1.29.0.zip(r-4.5)
ADAMgui_1.29.0.tgz(r-4.6-any)ADAMgui_1.29.0.tgz(r-4.5-any)
ADAMgui_1.29.0.tar.gz(r-4.7-any)ADAMgui_1.29.0.tar.gz(r-4.6-any)
ADAMgui_1.29.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
ADAMgui/json (API)
| # Install 'ADAMgui' in R: |
| install.packages('ADAMgui', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/jrybarczyk/adamgui/issues
Datasets:
- DiffAedes - Aedes aegypti RNA-seq differential expression data example
- GeneFunctionAedes - Relation between Aedes aegypti genes and KEGG pathways
- ResultAnalysisAedes - Result from an example of ADAM Aedes aegypti analysis
On BioConductor:ADAMgui-1.29.0(bioc 3.24)ADAMgui-1.28.0(bioc 3.23)
Last updated from:5afaeede94. Checks:1 WARNING, 7 NOTE, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | WARNING | 213 | ||
| linux-devel-x86_64 | NOTE | 336 | ||
| source / vignettes | OK | 291 | ||
| linux-release-x86_64 | NOTE | 337 | ||
| macos-release-arm64 | NOTE | 172 | ||
| macos-oldrel-arm64 | NOTE | 192 | ||
| windows-devel | NOTE | 443 | ||
| windows-release | NOTE | 488 | ||
| windows-oldrel | NOTE | 426 | ||
| wasm-release | OK | 197 |
Exports:GFAGpathUiGFAGtargetUi
Dependencies:abindADAMAnnotationDbiaskpassbackportsbase64encBiobaseBiocGenericsBiostringsbitbit64blobbootbriobroombslibcachemcallrcarcarDataclicolorRampscolorspacecommonmarkcorrplotcowplotcpp11crayoncrosstalkcurldata.tableDBIDelayedArrayDerivdescdiffobjdigestdoBydplyrDTevaluatefarverfastmapfontawesomeforecastFormulafracdifffsgenericsGenomicRangesggplot2ggpubrggrepelggsciggsignifglueGO.dbgridExtragtablehighrhtmltoolshtmlwidgetshttpuvhttrIRangesisobandjquerylibjsonliteKEGGRESTknitrlabelinglaterlatticelazyevallifecyclelme4lmtestmagrittrMASSMatrixMatrixGenericsMatrixModelsmatrixStatsmemoisemgcvmimeminqamodelrnlmenloptrnnetnumDerivopensslotelpbapplypbkrtestpillarpkgbuildpkgconfigpkgloadplyrpngpolynompraiseprocessxpromisespspurrrquantregR6rappdirsrbibutilsRColorBrewerRcppRcppArmadilloRcppEigenRdpackreformulasreshape2rlangrmarkdownrprojrootRSQLiterstatixS4ArraysS4VectorsS7sassscalesSeqinfoshinyshinyjssourcetoolsSparseArraySparseMstringistringrSummarizedExperimentsurvivalsystestthattibbletidyrtidyselecttimeDatetinytexurcautf8varhandlevctrsviridisLitewaldowithrxfunxtableXVectoryamlzoo
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Aedes aegypti RNA-seq differential expression data example | DiffAedes |
| Relation between Aedes aegypti genes and KEGG pathways | GeneFunctionAedes |
| GFAGpathUi | GFAGpathUi |
| GFAGtargetUi | GFAGtargetUi |
| Result from an example of ADAM Aedes aegypti analysis | ResultAnalysisAedes |
