Package: ADAM 1.29.0

Jose Luiz Rybarczyk Filho

ADAM: ADAM: Activity and Diversity Analysis Module

ADAM is a GSEA R package created to group a set of genes from comparative samples (control versus experiment) belonging to different species according to their respective functions (Gene Ontology and KEGG pathways as default) and show their significance by calculating p-values referring togene diversity and activity. Each group of genes is called GFAG (Group of Functionally Associated Genes).

Authors:André Luiz Molan [aut], Giordano Bruno Sanches Seco [ctb], Agnes Takeda [ctb], Jose Rybarczyk Filho [ctb, cre, ths]

ADAM_1.29.0.tar.gz
ADAM_1.29.0.zip(r-4.7)ADAM_1.29.0.zip(r-4.6)ADAM_1.29.0.zip(r-4.5)
ADAM_1.29.0.tgz(r-4.6-x86_64)ADAM_1.29.0.tgz(r-4.6-arm64)ADAM_1.29.0.tgz(r-4.5-x86_64)ADAM_1.29.0.tgz(r-4.5-arm64)
ADAM_1.29.0.tar.gz(r-4.7-arm64)ADAM_1.29.0.tar.gz(r-4.7-x86_64)ADAM_1.29.0.tar.gz(r-4.6-arm64)ADAM_1.29.0.tar.gz(r-4.6-x86_64)
ADAM_1.29.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
ADAM/json (API)
NEWS

# Install 'ADAM' in R:
install.packages('ADAM', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))
Uses libs:
  • c++– GNU Standard C++ Library v3
Datasets:

On BioConductor:ADAM-1.29.0(bioc 3.24)ADAM-1.28.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

genesetenrichmentpathwayskegggeneexpressionmicroarraycpp

5.10 score 1 packages 21 scripts 416 downloads 482 mentions 2 exports 80 dependencies

Last updated from:8f82406121. Checks:1 WARNING, 11 NOTE, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksWARNING196
linux-devel-arm64NOTE277
linux-devel-x86_64NOTE351
source / vignettesOK260
linux-release-arm64NOTE266
linux-release-x86_64NOTE318
macos-release-arm64NOTE229
macos-release-x86_64NOTE526
macos-oldrel-arm64NOTE193
macos-oldrel-x86_64NOTE345
windows-develNOTE452
windows-releaseNOTE406
windows-oldrelNOTE428
wasm-releaseOK155

Exports:ADAnalysisGFAGAnalysis

Dependencies:abindAnnotationDbiaskpassbase64encBiobaseBiocGenericsBiostringsbitbit64blobbslibcachemclicpp11crayoncrosstalkcurlDBIDelayedArraydigestdplyrDTevaluatefastmapfontawesomefsgenericsGenomicRangesglueGO.dbhighrhtmltoolshtmlwidgetshttrIRangesjquerylibjsonliteKEGGRESTknitrlaterlatticelazyevallifecyclemagrittrMatrixMatrixGenericsmatrixStatsmemoisemimeopensslotelpbapplypillarpkgconfigpngpromisesR6rappdirsRcpprlangrmarkdownRSQLiteS4ArraysS4VectorssassSeqinfoSparseArraystringistringrSummarizedExperimentsystibbletidyselecttinytexutf8vctrswithrxfunXVectoryaml

ADAM: Activity and Diversity Analysis Module

André L. Molan, Giordano B. S. Seco, Agnes A. S. Takeda, Jose L. Rybarczyk-Filho

Rendered fromADAM.Rmdusingknitr::rmarkdownon May 29 2026.

Last update: 2021-09-01
Started: 2018-10-05