Package: ADAM 1.23.0

Jose Luiz Rybarczyk Filho

ADAM: ADAM: Activity and Diversity Analysis Module

ADAM is a GSEA R package created to group a set of genes from comparative samples (control versus experiment) belonging to different species according to their respective functions (Gene Ontology and KEGG pathways as default) and show their significance by calculating p-values referring togene diversity and activity. Each group of genes is called GFAG (Group of Functionally Associated Genes).

Authors:André Luiz Molan [aut], Giordano Bruno Sanches Seco [ctb], Agnes Takeda [ctb], Jose Rybarczyk Filho [ctb, cre, ths]

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ADAM.pdf |ADAM.html✨
ADAM/json (API)
NEWS

# Install 'ADAM' in R:
install.packages('ADAM', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Uses libs:
  • c++– GNU Standard C++ Library v3
Datasets:

On BioConductor:ADAM-1.23.0(bioc 3.21)ADAM-1.22.0(bioc 3.20)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

genesetenrichmentpathwayskegggeneexpressionmicroarraycpp

4.78 score 1 packages 8 scripts 458 downloads 482 mentions 2 exports 85 dependencies

Last updated 2 months agofrom:6c1c9e3bc8. Checks:OK: 1 NOTE: 8. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 26 2024
R-4.5-win-x86_64NOTENov 26 2024
R-4.5-linux-x86_64NOTENov 26 2024
R-4.4-win-x86_64NOTENov 26 2024
R-4.4-mac-x86_64NOTENov 26 2024
R-4.4-mac-aarch64NOTENov 26 2024
R-4.3-win-x86_64NOTENov 26 2024
R-4.3-mac-x86_64NOTENov 26 2024
R-4.3-mac-aarch64NOTENov 26 2024

Exports:ADAnalysisGFAGAnalysis

Dependencies:abindAnnotationDbiaskpassbase64encBiobaseBiocGenericsBiostringsbitbit64blobbslibcachemclicpp11crayoncrosstalkcurlDBIDelayedArraydigestdplyrDTevaluatefansifastmapfontawesomefsgenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesglueGO.dbhighrhtmltoolshtmlwidgetshttpuvhttrIRangesjquerylibjsonliteKEGGRESTknitrlaterlatticelazyevallifecyclemagrittrMatrixMatrixGenericsmatrixStatsmemoisemimeopensslpbapplypillarpkgconfigplogrpngpromisesR6rappdirsRcpprlangrmarkdownRSQLiteS4ArraysS4VectorssassSparseArraystringistringrSummarizedExperimentsystibbletidyselecttinytexUCSC.utilsutf8vctrswithrxfunXVectoryamlzlibbioc

ADAM: Activity and Diversity Analysis Module

André L. Molan, Giordano B. S. Seco, Agnes A. S. Takeda, Jose L. Rybarczyk-Filho

Rendered fromADAM.Rmdusingknitr::rmarkdownon Nov 26 2024.

Last update: 2021-09-01
Started: 2018-10-05