Package: ADAM 1.21.0

Jose Luiz Rybarczyk Filho

ADAM: ADAM: Activity and Diversity Analysis Module

ADAM is a GSEA R package created to group a set of genes from comparative samples (control versus experiment) belonging to different species according to their respective functions (Gene Ontology and KEGG pathways as default) and show their significance by calculating p-values referring togene diversity and activity. Each group of genes is called GFAG (Group of Functionally Associated Genes).

Authors:André Luiz Molan [aut], Giordano Bruno Sanches Seco [ctb], Agnes Takeda [ctb], Jose Rybarczyk Filho [ctb, cre, ths]

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NEWS

# Install 'ADAM' in R:

install.packages('ADAM', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Uses libs:

c++– GNU Standard C++ Library v3

Datasets:

ExpressionAedes - Aedes aegypti RNA-seq data expression
KeggPathwaysAedes - Relation between Aedes aegypti genes and KEGG pathways as ADAM input

On BioConductor:ADAM-1.21.0(bioc 3.20)ADAM-1.20.0(bioc 3.19)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

bioconductor-package

2 exports 0.82 score 85 dependencies 1 dependents 482 mentions

Last updated 2 months agofrom:2809620d5b

Exports:ADAnalysis GFAGAnalysis

Dependencies:abind AnnotationDbi askpass base64enc Biobase BiocGenerics Biostrings bit bit64 blob bslib cachem cli cpp11 crayon crosstalk curl DBI DelayedArray digest dplyr DT evaluate fansi fastmap fontawesome fs generics GenomeInfoDb GenomeInfoDbData GenomicRanges glue GO.db highr htmltools htmlwidgets httpuv httr IRanges jquerylib jsonlite KEGGREST knitr later lattice lazyeval lifecycle magrittr Matrix MatrixGenerics matrixStats memoise mime openssl pbapply pillar pkgconfig plogr png promises R6 rappdirs Rcpp rlang rmarkdown RSQLite S4Arrays S4Vectors sass SparseArray stringi stringr SummarizedExperiment sys tibble tidyselect tinytex UCSC.utils utf8 vctrs withr xfun XVector yaml zlibbioc

ADAM: Activity and Diversity Analysis Module

André L. Molan, Giordano B. S. Seco, Agnes A. S. Takeda, Jose L. Rybarczyk-Filho

Rendered fromADAM.Rmdusingknitr::rmarkdownon Jun 24 2024.

Last update: 2021-09-01
Started: 2018-10-05

Help page	Topics
Group of Functionally Associated Genes (GFAG) partial analysis	ADAnalysis
Aedes aegypti RNA-seq data expression	ExpressionAedes
Group of Functionally Associated Genes (GFAG) complete analysis	GFAGAnalysis
Relation between Aedes aegypti genes and KEGG pathways as ADAM input	KeggPathwaysAedes

Package: ADAM 1.21.0

ADAM: ADAM: Activity and Diversity Analysis Module

ADAM: Activity and Diversity Analysis Module

Citation

Development and contributors

Readme and manuals

Help Manual

Usage by other packages (reverse dependencies)