Package: ABarray 1.75.0

Yongming Andrew Sun

ABarray: Microarray QA and statistical data analysis for Applied Biosystems Genome Survey Microrarray (AB1700) gene expression data.

Automated pipline to perform gene expression analysis for Applied Biosystems Genome Survey Microarray (AB1700) data format. Functions include data preprocessing, filtering, control probe analysis, statistical analysis in one single function. A GUI interface is also provided. The raw data, processed data, graphics output and statistical results are organized into folders according to the analysis settings used.

Authors:Yongming Andrew Sun

ABarray_1.75.0.tar.gz
ABarray_1.75.0.zip(r-4.5)ABarray_1.75.0.zip(r-4.4)ABarray_1.75.0.zip(r-4.3)
ABarray_1.75.0.tgz(r-4.5-any)ABarray_1.75.0.tgz(r-4.4-any)ABarray_1.75.0.tgz(r-4.3-any)
ABarray_1.75.0.tar.gz(r-4.5-noble)ABarray_1.75.0.tar.gz(r-4.4-noble)
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ABarray.pdf |ABarray.html✨
ABarray/json (API)

# Install 'ABarray' in R:
install.packages('ABarray', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

On BioConductor:ABarray-1.75.0(bioc 3.21)ABarray-1.74.0(bioc 3.20)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

microarrayonechannelpreprocessing

4.20 score 3 scripts 442 downloads 4 mentions 28 exports 8 dependencies

Last updated 5 months agofrom:efb1f10741. Checks:1 OK, 8 NOTE. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKMar 29 2025
R-4.5-winNOTEMar 29 2025
R-4.5-macNOTEMar 29 2025
R-4.5-linuxNOTEMar 29 2025
R-4.4-winNOTEMar 29 2025
R-4.4-macNOTEMar 29 2025
R-4.4-linuxNOTEMar 29 2025
R-4.3-winNOTEMar 29 2025
R-4.3-macNOTEMar 29 2025

Exports:ABarrayABarrayGUIcalcsnconcordcvvcvvPlotdoANOVAdoLPEdoPlotEsetdoPlotFCTdoVennDiagramdrawVennDiagramgetMemberEsetgetPantherMaphclusterPloticpPlotimputeFlaglpe.fdr.BHmamaplotmatrixPlotmvaPair2panel.corpanel.scatterqnNormalizergcolorsfuncsavejpgscaleColorBarsnSummary

Dependencies:BiobaseBiocGenericsgenericslatticeMASSMatrixmulttestsurvival

ABarray gene expression

Rendered fromABarray.Rnwusingutils::Sweaveon Mar 29 2025.

Last update: 2013-11-01
Started: 2013-11-01

ABarray gene expression GUI interface

Rendered fromABarrayGUI.Rnwusingutils::Sweaveon Mar 29 2025.

Last update: 2013-11-01
Started: 2013-11-01