Package: basilisk.utils 1.17.0

Aaron Lun

basilisk.utils: Basilisk Installation Utilities

Implements utilities for installation of the basilisk package, primarily for creation of the underlying Conda instance. This allows us to avoid re-writing the same R code in both the configure script (for centrally administered R installations) and in the lazy installation mechanism (for distributed package binaries). It is highly unlikely that developers - or, heaven forbid, end-users! - will need to interact with this package directly; they should be using the basilisk package instead.

Authors:Aaron Lun [aut, cre, cph]

basilisk.utils_1.17.0.tar.gz
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basilisk.utils_1.17.0.tgz(r-4.4-any)basilisk.utils_1.17.0.tgz(r-4.3-any)
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basilisk.utils.pdf |basilisk.utils.html
basilisk.utils/json (API)
NEWS

# Install 'basilisk.utils' in R:
install.packages('basilisk.utils', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

On BioConductor:basilisk.utils-1.17.0(bioc 3.20)basilisk.utils-1.16.0(bioc 3.19)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

bioconductor-package

26 exports 4.15 score 2 dependencies 32 dependents

Last updated 2 months agofrom:e331a58c0a

Exports:activateEnvironmentcleanCondaclearExternalDirclearObsoleteDirdeactivateEnvironmentdestroyOldVersionsdir.create2getCondaBinarygetCondaDirgetExternalDirgetFallbackREnvgetPythonBinarygetSystemDirinstallCondaisLinuxisLinuxAarch64isMacOSXisMacOSXArmisWindowslockExternalDirnoFallbackRsetCondaPackageDirsetVariableunlink2unlockExternalDiruseSystemDir

Dependencies:dir.expiryfilelock

Utilities for basilisk installation

Rendered frompurpose.Rmdusingknitr::rmarkdownon Jun 12 2024.

Last update: 2020-12-16
Started: 2020-01-24

Readme and manuals

Help Manual

Help pageTopics
Activate a Conda environmentactivateEnvironment deactivateEnvironment
Run 'conda clean'cleanConda
Clear the external installation directoryclearExternalDir clearObsoleteDir
Destroy old versions?destroyOldVersions
Safe directory constructiondir.create2
Get binary pathsgetBinaries getCondaBinary getPythonBinary
Get the 'basilisk' Conda directorygetCondaDir
Get an external conda directorygetExternalDir
Get the path to the fallback R environmentgetFallbackREnv
Get the system installation directorygetSystemDir
Install (Mini)condainstallConda
Find the operating system or architecture.isLinux isLinuxAarch64 isMacOSX isMacOSXArm isWindows
Lock external directorylockExternalDir unlockExternalDir
Don't install a fallback version of RnoFallbackR
Set or unset the Conda package directorysetCondaPackageDir
Set an environment variablesetVariable
Safe file deletionunlink2
Use the R system directory?useSystemDir