Package: alabaster.vcf 1.5.0

Aaron Lun

alabaster.vcf: Save and Load Variant Data to/from File

Save variant calling SummarizedExperiment to file and load them back as VCF objects. This is a more portable alternative to serialization of such objects into RDS files. Each artifact is associated with metadata for further interpretation; downstream applications can enrich this metadata with context-specific properties.

Authors:Aaron Lun [aut, cre]

alabaster.vcf_1.5.0.tar.gz
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alabaster.vcf.pdf |alabaster.vcf.html✨
alabaster.vcf/json (API)

Peer review:

On BioConductor:alabaster.vcf-1.5.0(bioc 3.20)alabaster.vcf-1.4.0(bioc 3.19)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

bioconductor-package

6 exports 0.91 score 83 dependencies 1 dependents

Last updated 2 months agofrom:d7d3a10adb

Exports:.altLoadVCFHeaderloadVCFloadVCFHeaderreadVCFsaveObjectstageObject

Dependencies:abindalabaster.basealabaster.matrixalabaster.rangesalabaster.schemasalabaster.sealabaster.stringAnnotationDbiaskpassBHBiobaseBiocGenericsBiocIOBiocParallelBiostringsbitbit64bitopsblobBSgenomecachemclicodetoolscpp11crayoncurlDBIDelayedArrayfastmapformatRfutile.loggerfutile.optionsGenomeInfoDbGenomeInfoDbDataGenomicAlignmentsGenomicFeaturesGenomicRangesglueHDF5ArrayhttrIRangesjsonlitejsonvalidateKEGGRESTlambda.rlatticelifecycleMatrixMatrixGenericsmatrixStatsmemoisemimeopensslpkgconfigplogrpngR6RcppRCurlrestfulrrhdf5rhdf5filtersRhdf5libRhtslibrjsonrlangRsamtoolsRSQLitertracklayerS4ArraysS4VectorssnowSparseArraySummarizedExperimentsysUCSC.utilsV8VariantAnnotationvctrsXMLXVectoryamlzlibbioc