Package: alabaster.se 1.5.2
alabaster.se: Load and Save SummarizedExperiments from File
Save SummarizedExperiments into file artifacts, and load them back into memory. This is a more portable alternative to serialization of such objects into RDS files. Each artifact is associated with metadata for further interpretation; downstream applications can enrich this metadata with context-specific properties.
Authors:
alabaster.se_1.5.2.tar.gz
alabaster.se_1.5.2.zip(r-4.5)alabaster.se_1.5.2.zip(r-4.4)alabaster.se_1.5.2.zip(r-4.3)
alabaster.se_1.5.2.tgz(r-4.4-any)alabaster.se_1.5.2.tgz(r-4.3-any)
alabaster.se_1.5.2.tar.gz(r-4.5-noble)alabaster.se_1.5.2.tar.gz(r-4.4-noble)
alabaster.se_1.5.2.tgz(r-4.4-emscripten)alabaster.se_1.5.2.tgz(r-4.3-emscripten)
alabaster.se.pdf |alabaster.se.html✨
alabaster.se/json (API)
NEWS
# Install 'alabaster.se' in R: |
install.packages('alabaster.se', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:alabaster.se-1.5.2(bioc 3.20)alabaster.se-1.4.1(bioc 3.19)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 2 months agofrom:7528d0ad39
Exports:emptyRowRangesloadSummarizedExperimentreadRangedSummarizedExperimentreadSummarizedExperimentsaveObjectstageObject
Dependencies:abindalabaster.basealabaster.matrixalabaster.rangesalabaster.schemasaskpassBiobaseBiocGenericscrayoncurlDelayedArrayGenomeInfoDbGenomeInfoDbDataGenomicRangesHDF5ArrayhttrIRangesjsonlitejsonvalidatelatticeMatrixMatrixGenericsmatrixStatsmimeopensslR6Rcpprhdf5rhdf5filtersRhdf5libS4ArraysS4VectorsSparseArraySummarizedExperimentsysUCSC.utilsV8XVectorzlibbioc
Readme and manuals
Help Manual
Help page | Topics |
---|---|
Is the 'rowRanges' empty? | emptyRowRanges |
Read a RangedSummarizedExperiment from disk | readRangedSummarizedExperiment |
Read a SummarizedExperiment from disk | loadSummarizedExperiment readSummarizedExperiment |
Save a RangedSummarizedExperiment to disk | saveObject,RangedSummarizedExperiment-method saveRangedSummarizedExperiment stageObject,RangedSummarizedExperiment-method |
Save a SummarizedExperiment to disk | saveObject,SummarizedExperiment-method saveSummarizedExperiment stageObject,SummarizedExperiment-method |