Package: alabaster.se 1.5.2

Aaron Lun

alabaster.se: Load and Save SummarizedExperiments from File

Save SummarizedExperiments into file artifacts, and load them back into memory. This is a more portable alternative to serialization of such objects into RDS files. Each artifact is associated with metadata for further interpretation; downstream applications can enrich this metadata with context-specific properties.

Authors:Aaron Lun [aut, cre]

alabaster.se_1.5.2.tar.gz
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alabaster.se_1.5.2.tgz(r-4.4-any)alabaster.se_1.5.2.tgz(r-4.3-any)
alabaster.se_1.5.2.tar.gz(r-4.5-noble)alabaster.se_1.5.2.tar.gz(r-4.4-noble)
alabaster.se_1.5.2.tgz(r-4.4-emscripten)alabaster.se_1.5.2.tgz(r-4.3-emscripten)
alabaster.se.pdf |alabaster.se.html
alabaster.se/json (API)
NEWS

# Install 'alabaster.se' in R:
install.packages('alabaster.se', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

On BioConductor:alabaster.se-1.5.2(bioc 3.20)alabaster.se-1.4.1(bioc 3.19)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

bioconductor-package

6 exports 2.14 score 39 dependencies 6 dependents

Last updated 2 months agofrom:7528d0ad39

Exports:emptyRowRangesloadSummarizedExperimentreadRangedSummarizedExperimentreadSummarizedExperimentsaveObjectstageObject

Dependencies:abindalabaster.basealabaster.matrixalabaster.rangesalabaster.schemasaskpassBiobaseBiocGenericscrayoncurlDelayedArrayGenomeInfoDbGenomeInfoDbDataGenomicRangesHDF5ArrayhttrIRangesjsonlitejsonvalidatelatticeMatrixMatrixGenericsmatrixStatsmimeopensslR6Rcpprhdf5rhdf5filtersRhdf5libS4ArraysS4VectorsSparseArraySummarizedExperimentsysUCSC.utilsV8XVectorzlibbioc

Saving SummarizedExperiments to artifacts and back again

Rendered fromuserguide.Rmdusingknitr::rmarkdownon Jun 21 2024.

Last update: 2023-11-29
Started: 2022-09-21

Readme and manuals

Help Manual

Help pageTopics
Is the 'rowRanges' empty?emptyRowRanges
Read a RangedSummarizedExperiment from diskreadRangedSummarizedExperiment
Read a SummarizedExperiment from diskloadSummarizedExperiment readSummarizedExperiment
Save a RangedSummarizedExperiment to disksaveObject,RangedSummarizedExperiment-method saveRangedSummarizedExperiment stageObject,RangedSummarizedExperiment-method
Save a SummarizedExperiment to disksaveObject,SummarizedExperiment-method saveSummarizedExperiment stageObject,SummarizedExperiment-method