Package: alabaster.sce 1.5.1

Aaron Lun

alabaster.sce: Load and Save SingleCellExperiment from File

Save SingleCellExperiment into file artifacts, and load them back into memory. This is a more portable alternative to serialization of such objects into RDS files. Each artifact is associated with metadata for further interpretation; downstream applications can enrich this metadata with context-specific properties.

Authors:Aaron Lun [aut, cre]

alabaster.sce_1.5.1.tar.gz
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alabaster.sce_1.5.1.tgz(r-4.4-any)alabaster.sce_1.5.1.tgz(r-4.3-any)
alabaster.sce_1.5.1.tar.gz(r-4.5-noble)alabaster.sce_1.5.1.tar.gz(r-4.4-noble)
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alabaster.sce.pdf |alabaster.sce.html
alabaster.sce/json (API)
NEWS

# Install 'alabaster.sce' in R:
install.packages('alabaster.sce', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

On BioConductor:alabaster.sce-1.5.1(bioc 3.20)alabaster.sce-1.4.0(bioc 3.19)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

bioconductor-package

4 exports 1.64 score 41 dependencies 3 dependents

Last updated 2 months agofrom:131edf5cc6

Exports:loadSingleCellExperimentreadSingleCellExperimentsaveObjectstageObject

Dependencies:abindalabaster.basealabaster.matrixalabaster.rangesalabaster.schemasalabaster.seaskpassBiobaseBiocGenericscrayoncurlDelayedArrayGenomeInfoDbGenomeInfoDbDataGenomicRangesHDF5ArrayhttrIRangesjsonlitejsonvalidatelatticeMatrixMatrixGenericsmatrixStatsmimeopensslR6Rcpprhdf5rhdf5filtersRhdf5libS4ArraysS4VectorsSingleCellExperimentSparseArraySummarizedExperimentsysUCSC.utilsV8XVectorzlibbioc

Saving SingleCellExperiments to artifacts and back again

Rendered fromuserguide.Rmdusingknitr::rmarkdownon Jun 21 2024.

Last update: 2023-11-29
Started: 2022-09-21

Readme and manuals

Help Manual

Help pageTopics
Read a SingleCellExperiment from diskloadSingleCellExperiment readSingleCellExperiment
Save a SingleCellExperiment to disksaveObject,SingleCellExperiment-method saveSingleCellExperiment stageObject,SingleCellExperiment-method